Rmu_sc0001324.1_g000004

Transmembrane protein 50 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001324.1
N/A
Physical Location & Seq
Reverse (-)
29940 .. 31484
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atgttcaattgtgtgaagaaggacgacattgattactctccttatgaagagggcgagtggaggttgaagctttggctgttcattgcttatgttgtttcctttgtatcgttggcggcatcagtgggtttgctaatacaagattcacttgagacgactggcccttcagtgtggacaggaactgctggtgtattgcaagccgttttcgtgttggtcagtggacttatatattggactgctcactcgcacgataggcatgcaaagattttcatcttgcaaattgtgaaactgaacaaaatagatgagaacacggacagctctcaactcgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

4.97

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0220 PF05255 5 - 81 5.1e-12 Uncharacterised protein family (UPF0220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 147
AgsI TTSAA 2 cut(s) 7, 67
AluBI AGCT 2 cut(s) 70, 315
AluI AGCT 2 cut(s) 70, 315
Alw26I GTCTC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 266
BseMI GCAATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 160
BshFI GGCC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 159
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 195, 255
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 126, 171, 220
Cac8I GCNNGC 2 cut(s) 195, 255
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 1 cut(s) 254
CviJI RGCY 5 cut(s) 70, 76, 159, 197, 315
CviKI_1 RGCY 5 cut(s) 70, 76, 159, 197, 315
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 45, 90, 224, 226, 255
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 171, 218
Hpy8I GTNNAC 2 cut(s) 171, 218
HpyAV CCTTC 2 cut(s) 13, 171
HpyCH4V TGCA 3 cut(s) 193, 257, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
Hsp92II CATG 1 cut(s) 257
LpnPI CCDG 3 cut(s) 141, 159, 168
LweI GCATC 1 cut(s) 125
MboII GAAGA 2 cut(s) 28, 59
MfeI CAATTG 1 cut(s) 7
MluCI AATT 2 cut(s) 7, 276
MnlI CCTC 2 cut(s) 43, 54
MunI CAATTG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 250
NlaIII CATG 1 cut(s) 257
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 158
SetI ASST 3 cut(s) 65, 72, 317
SfaNI GCATC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 257
Sse9I AATT 2 cut(s) 7, 276
SsiI CCGC 1 cut(s) 113
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 7, 276
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 3 cut(s) 126, 171, 220
TspDTI ATGAA 3 cut(s) 60, 70, 256
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 3 cut(s) 126, 171, 220
XceI RCATGY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.