Rmu_sc0001329.1_g000018

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001329.1
N/A
Physical Location & Seq
Forward (+)
55590 .. 56111
522 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atgcataaagaggttcttttgaacaacaatgtcaggcctattgggacaaagagaattcccgaggctaattatggcaaagaaaaaggtgaaaagaaccccaatgcaaaagaggttggaagtgctgatccctacccacgtggcaacaatacaccacgtggaaagggacatgggggtcgtgcaagcaacatagttgcagccacttacaagaggtatagggagtctaaagcacaagaggctctctatatggaagaaggaggccatgacccaaatgtcaacctcacaattgcagacttcaatggcaacaaggaacttgctcagtcaatggatgcactagattttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

7.96

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 171, 269
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 54
AcvI CACGTG 2 cut(s) 137, 155
AdeI CACNNNGTG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 22, 295
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 2 cut(s) 35, 256
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 59
BbrPI CACGTG 2 cut(s) 137, 155
BbvI GCAGC 1 cut(s) 206
BfaI CTAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 59
BmsI GCATC 1 cut(s) 316
BsaAI YACGTR 2 cut(s) 137, 155
BsaJI CCNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 2 cut(s) 37, 258
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 58, 177
BsmFI GGGAC 2 cut(s) 58, 177
BsnI GGCC 2 cut(s) 37, 258
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 2 cut(s) 37, 258
BspCNI CTCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 124
BstBAI YACGTR 2 cut(s) 137, 155
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 37, 258
BtsCI GGATG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 181
CviAII CATG 2 cut(s) 167, 260
CviJI RGCY 5 cut(s) 37, 65, 197, 236, 258
CviKI_1 RGCY 5 cut(s) 37, 65, 197, 236, 258
DdeI CTNAG 1 cut(s) 315
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 155
DrdI GACNNNNNNGTC 2 cut(s) 171, 269
DseDI GACNNNNNNGTC 2 cut(s) 171, 269
Eco147I AGGCCT 1 cut(s) 37
Eco72I CACGTG 2 cut(s) 137, 155
Eco88I CYCGRG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 170, 263
FaiI YATR 8 cut(s) 6, 72, 168, 188, 213, 243, 245, 261
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 58, 177
FatI CATG 2 cut(s) 166, 259
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 2 cut(s) 37, 258
Hin1II CATG 2 cut(s) 170, 263
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 2 cut(s) 136, 154
HpyCH4V TGCA 6 cut(s) 4, 104, 179, 194, 287, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 2 cut(s) 136, 154
Hsp92II CATG 2 cut(s) 170, 263
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 136, 154
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 1 cut(s) 282
MluCI AATT 3 cut(s) 54, 67, 282
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 7 cut(s) 4, 55, 103, 201, 226, 248, 287
Mph1103I ATGCAT 1 cut(s) 6
MunI CAATTG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 170, 263
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 37
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 226
PmaCI CACGTG 2 cut(s) 137, 155
PmlI CACGTG 2 cut(s) 137, 155
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 2 cut(s) 137, 155
PspCI CACGTG 2 cut(s) 137, 155
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 1 cut(s) 227
SetI ASST 7 cut(s) 15, 88, 114, 139, 157, 212, 279
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 3 cut(s) 54, 67, 282
SseBI AGGCCT 1 cut(s) 37
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 1 cut(s) 37
TaiI ACGT 2 cut(s) 139, 157
TasI AATT 3 cut(s) 54, 67, 282
TseI GCWGC 1 cut(s) 194
XapI RAATTY 1 cut(s) 54
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.