Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

74065 .. 76833

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgccaagttcttcgaggaaagagagattgaagcatagagatgagagagagtaccaggagagagaaagtagatctggtttctctattttccatctttgttctccgagcatcatccggcgacattgccgctaccaatgggctcttcagcctccaattagtcgacccaagctgcgtcatccaacgatactggaagtcagcactacatgctgccggctgcgagtccggatctatgacctttggttcatggagctccgcgctccgttggccaaaggattgaaggtgattggagctgttggattcatgaaccaaagactggagattccaaaagatgtggagccaaagtgggcttctataattgagagttgctggcacaggtgtgattgctatgctaatgtgggtgaggcaggactaactttcgaaagtgaagaagctgcaggggaatttgctgaaaaacatgttgggattatacgtttaggaagcatcaaacaccacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS PAS_9 Pkinase_Tyr

Protein Analysis

165

Amino Acids

19.25

Weight (kDa)

9.19

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	2 cut(s)	127, 253
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	31, 277
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	6 cut(s)	126, 158, 331, 363, 441, 473
AleI	CACNNNNGTG	1 cut(s)	375
AluBI	AGCT	4 cut(s)	169, 250, 290, 431
AluI	AGCT	4 cut(s)	169, 250, 290, 431
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	4 cut(s)	169, 207, 214, 431
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	292, 410
AsuII	TTCGAA	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	142, 252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	156, 194, 201, 418
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	432
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	5 cut(s)	127, 170, 208, 215, 432
BlsI	GCNGC	5 cut(s)	128, 171, 209, 216, 433
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	117, 489
BpmI	CTGGAG	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	192, 318
Bse3DI	GCAATG	1 cut(s)	121
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	111, 175
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	2 cut(s)	192, 318
BseXI	GCAGC	4 cut(s)	156, 194, 201, 418
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	115, 211, 223
BslI	CCNNNNNNNGG	1 cut(s)	313
BsnI	GGCC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	142, 252
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	71, 225
BspACI	CCGC	2 cut(s)	127, 253
BspANI	GGCC	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	192, 318
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	2 cut(s)	71, 225
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	212, 368
BstF5I	GGATG	2 cut(s)	111, 175
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	74, 228
BstMBI	GATC	2 cut(s)	71, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 263
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	2 cut(s)	207, 458
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	4 cut(s)	156, 194, 201, 418
BstX2I	RGATCY	2 cut(s)	71, 225
BstYI	RGATCY	2 cut(s)	71, 225
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	111, 175
Cac8I	GCNNGC	2 cut(s)	212, 368
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	210
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	4 cut(s)	204, 244, 301, 455
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	73, 227
DpnII	GATC	2 cut(s)	71, 225
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	142, 252
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	142, 252
FaeI	CATG	4 cut(s)	207, 247, 304, 458
FaiI	YATR	9 cut(s)	36, 205, 231, 245, 302, 353, 387, 456, 467
FatI	CATG	4 cut(s)	203, 243, 300, 454
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	127, 170, 208, 215, 432
FokI	GGATG	2 cut(s)	98, 162
FriOI	GRGCYC	2 cut(s)	142, 252
Fsp4HI	GCNGC	5 cut(s)	127, 170, 208, 215, 432
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	5 cut(s)	127, 170, 208, 215, 432
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	3 cut(s)	115, 211, 223
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	207, 247, 304, 458
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	219, 297, 319
HpaII	CCGG	3 cut(s)	115, 211, 223
HphI	GGTGA	2 cut(s)	292, 410
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	223, 301
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 263
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	207, 247, 304, 458
HspAI	GCGC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	71, 225
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	5 cut(s)	247, 255, 262, 287, 334
Lsp1109I	GCAGC	4 cut(s)	156, 194, 201, 418
LweI	GCATC	2 cut(s)	117, 489
MaeII	ACGT	1 cut(s)	469
MalI	GATC	2 cut(s)	73, 227
MboI	GATC	2 cut(s)	71, 225
MboII	GAAGA	3 cut(s)	3, 134, 437
MflI	RGATCY	2 cut(s)	71, 225
MhlI	GDGCHC	2 cut(s)	142, 252
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	153, 354, 440
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	2 cut(s)	203, 274
MnlI	CCTC	3 cut(s)	9, 159, 394
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	39, 375
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	3 cut(s)	115, 211, 223
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	204, 263
NaeI	GCCGGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	71, 225
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	4 cut(s)	207, 247, 304, 458
NlaIV	GGNNCC	1 cut(s)	336
NspI	RCATGY	2 cut(s)	207, 458
NspV	TTCGAA	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	375
PagI	TCATGA	1 cut(s)	300
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	297, 319
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	128, 171, 209, 216, 433
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	71, 225
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	39, 375
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	147
SatI	GCNGC	5 cut(s)	127, 170, 208, 215, 432
Sau3AI	GATC	2 cut(s)	71, 225
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	142, 252
SetI	ASST	8 cut(s)	171, 237, 252, 282, 292, 377, 433, 472
SfaNI	GCATC	2 cut(s)	117, 489
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	39, 375
Sse9I	AATT	3 cut(s)	153, 354, 440
SsiI	CCGC	2 cut(s)	127, 253
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	3 cut(s)	14, 160, 417
TasI	AATT	3 cut(s)	153, 354, 440
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	297, 319
TseI	GCWGC	4 cut(s)	169, 207, 214, 431
TspDTI	ATGAA	3 cut(s)	232, 289, 317
TspGWI	ACGGA	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	207, 458
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.