Rmu_sc0001342.1_g000001

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001342.1
N/A
Physical Location & Seq
Reverse (-)
734 .. 2114
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001342.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atgggagacttcgtcaaacttccatcgccagaatcctgtcacaggtctccggaagccggaatcctgtcaccggtcgttggaatccggacttcgccaggaacctcaccagagctcaccaaatattcccaaagagatcgtcggagatcttatagaaccagaaggcacagagagcgacttctcacgccgtcgtcgatgagcgaccgcaattcaacccgcccagatttaggtttctccttacatgatggcaacgacaaagcctcagatgatggcgacctagggctcaacgagggagaagccgacggtgatggttgcgaagccgccgaggaggccgttgcagtggccggagcaaggcaagagggtcggttggatcaaatccttgatcgtgaagtagtcaatgacggaaatcttaagacagtcgaaaagatggcgagcattgcagaaagatgtacaaggttaagaaacgaggaaaggccttccatgaaagaagtagccacggagctggaggtattgatgggaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

173

Amino Acids

19.05

Weight (kDa)

5.23

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 49, 84
AciI CCGC 3 cut(s) 202, 214, 318
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 516
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 6 cut(s) 42, 56, 70, 77, 224, 348
AflII CTTAAG 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 112, 499
AluI AGCT 2 cut(s) 112, 499
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 375
Aor13HI TCCGGA 2 cut(s) 49, 84
AoxI GGCC 3 cut(s) 327, 339, 470
ApoI RAATTY 1 cut(s) 516
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 1 cut(s) 70
AspA2I CCTAGG 1 cut(s) 274
AsuHPI GGTGA 4 cut(s) 60, 96, 106, 314
AvrII CCTAGG 1 cut(s) 274
BanII GRGCYC 2 cut(s) 114, 282
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 6 cut(s) 31, 236, 260, 299, 418, 505
BceAI ACGGC 2 cut(s) 169, 314
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 143
BisI GCNGC 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 274
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 274, 321, 492
BsaWI WCCGGW 3 cut(s) 49, 70, 84
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 56, 70, 77, 224, 348
Bse118I RCCGGY 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 2 cut(s) 49, 84
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 274, 321, 492
BseLI CCNNNNNNNGG 6 cut(s) 42, 56, 70, 77, 224, 348
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 338
Bsh1285I CGRYCG 2 cut(s) 75, 202
BshFI GGCC 3 cut(s) 329, 341, 472
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 2 cut(s) 75, 202
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 5 cut(s) 50, 57, 71, 85, 342
BslI CCNNNNNNNGG 6 cut(s) 42, 56, 70, 77, 224, 348
BsmAI GTCTC 1 cut(s) 51
BsnI GGCC 3 cut(s) 329, 341, 472
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 114, 282
Bsp13I TCCGGA 2 cut(s) 49, 84
Bsp1407I TGTACA 1 cut(s) 446
Bsp143I GATC 4 cut(s) 133, 143, 367, 379
BspACI CCGC 3 cut(s) 202, 214, 318
BspANI GGCC 3 cut(s) 329, 341, 472
BspCNI CTCAG 1 cut(s) 272
BspEI TCCGGA 2 cut(s) 49, 84
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 446
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 274, 321, 492
BssMI GATC 4 cut(s) 133, 143, 367, 379
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 302, 415
BstAFI CTTAAG 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 259
BstDSI CCRYGG 1 cut(s) 492
BstENI CCTNNNNNAGG 1 cut(s) 40
BstKTI GATC 4 cut(s) 136, 146, 370, 382
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 133, 143, 367, 379
BstMCI CGRYCG 2 cut(s) 75, 202
BstMWI GCNNNNNNNGC 3 cut(s) 169, 326, 434
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 3 cut(s) 329, 341, 472
BtgI CCRYGG 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 70
Csp6I GTAC 1 cut(s) 447
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 2 cut(s) 239, 478
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 1 cut(s) 259
DpnI GATC 4 cut(s) 135, 145, 369, 381
DpnII GATC 4 cut(s) 133, 143, 367, 379
EaeI YGGCCR 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 2 cut(s) 114, 282
Eco31I GGTCTC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 114, 282
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 242, 481
FaiI YATR 3 cut(s) 150, 240, 479
FatI CATG 2 cut(s) 238, 477
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 318
FriOI GRGCYC 2 cut(s) 114, 282
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 3 cut(s) 329, 341, 472
HapII CCGG 5 cut(s) 50, 57, 71, 85, 342
Hin1II CATG 2 cut(s) 242, 481
HinfI GANTC 3 cut(s) 32, 60, 81
HpaII CCGG 5 cut(s) 50, 57, 71, 85, 342
HphI GGTGA 4 cut(s) 60, 96, 106, 314
Hpy188I TCNGA 2 cut(s) 141, 262
Hpy188III TCNNGA 3 cut(s) 50, 85, 383
Hpy99I CGWCG 4 cut(s) 141, 190, 193, 302
HpyAV CCTTC 2 cut(s) 153, 483
HpyCH4III ACNGT 2 cut(s) 302, 415
HpyCH4V TGCA 2 cut(s) 335, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 326, 434
HpyF3I CTNAG 1 cut(s) 259
Hsp92II CATG 2 cut(s) 242, 481
Kpn2I TCCGGA 2 cut(s) 49, 84
Kzo9I GATC 4 cut(s) 133, 143, 367, 379
LmnI GCTCC 2 cut(s) 344, 496
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 38, 66
MalI GATC 4 cut(s) 135, 145, 369, 381
MboI GATC 4 cut(s) 133, 143, 367, 379
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 114, 282
MluCI AATT 2 cut(s) 205, 516
MmeI TCCRAC 3 cut(s) 58, 119, 345
MnlI CCTC 8 cut(s) 112, 268, 280, 316, 319, 349, 457, 496
MroI TCCGGA 2 cut(s) 49, 84
MseI TTAA 2 cut(s) 408, 455
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 5 cut(s) 50, 57, 71, 85, 342
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 169, 326, 434
NdeII GATC 4 cut(s) 133, 143, 367, 379
NlaIII CATG 2 cut(s) 242, 481
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 38, 66
PceI AGGCCT 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 3 cut(s) 32, 60, 81
PflFI GACNNNGTC 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 408, 455
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 4 cut(s) 133, 143, 367, 379
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 114, 282
SetI ASST 8 cut(s) 47, 104, 114, 229, 276, 455, 501, 507
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 205, 516
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 3 cut(s) 202, 214, 318
SspI AATATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 302, 415
TaqI TCGA 2 cut(s) 191, 417
TasI AATT 2 cut(s) 205, 516
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 3 cut(s) 32, 60, 81
Tru1I TTAA 2 cut(s) 408, 455
Tru9I TTAA 2 cut(s) 408, 455
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 2 cut(s) 38, 66
Tsp45I GTSAC 2 cut(s) 38, 66
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 2 cut(s) 414, 509
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 40
XapI RAATTY 1 cut(s) 516
XmaJI CCTAGG 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.