Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001348.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

123565 .. 125432

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggccgataaaatggataacacagaaggtggcctttgtgaagacaagatcctttgtgaacataaggatagtggaaaaccttttgcatacggactttgtcaaacctgttatgatgattttatgacaatttcaggtggacttgatggagggtctaatcctccagctttccagcgtgctgaaatagagagattgaaaaaagcatctgcggagctaaatgctaatgactctggcattgataccattgcttgtcaaagccttgacaacagtgatcagtcatccaagtctgagaaagagaacaacacaaaatcaggaagtgagaataaaggactgctgcttatggagcctgaaagtgatggttggtttctctatctctctctacctgtcctctccttttcattctccttttggtttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

4.37

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	2 cut(s)	164, 211
AluI	AGCT	2 cut(s)	164, 211
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	3, 31
ApeKI	GCWGC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	137, 347
BclI	TGATCA	1 cut(s)	268
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	342
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	2 cut(s)	5, 33
BsnI	GGCC	2 cut(s)	5, 33
Bsp143I	GATC	2 cut(s)	48, 268
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	5, 33
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	240
BssMI	GATC	2 cut(s)	48, 268
Bst4CI	ACNGT	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	51, 271
BstMBI	GATC	2 cut(s)	48, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	5, 33
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	174
CviJI	RGCY	6 cut(s)	5, 33, 164, 211, 255, 343
CviKI_1	RGCY	6 cut(s)	5, 33, 164, 211, 255, 343
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	50, 270
DpnII	GATC	2 cut(s)	48, 268
EaeI	YGGCCR	1 cut(s)	3
FaiI	YATR	5 cut(s)	63, 88, 111, 122, 338
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	5, 33
HinfI	GANTC	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	59, 137
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	2 cut(s)	59, 137
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	48, 268
LmnI	GCTCC	2 cut(s)	208, 340
LpnPI	CCDG	8 cut(s)	117, 118, 174, 182, 213, 294, 357, 393
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	1 cut(s)	209
MalI	GATC	2 cut(s)	50, 270
MboI	GATC	2 cut(s)	48, 268
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	140, 168, 395
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	48, 268
NlaIV	GGNNCC	1 cut(s)	342
PflFI	GACNNNGTC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	2 cut(s)	48, 268
SchI	GAGTC	1 cut(s)	218
SetI	ASST	7 cut(s)	31, 82, 107, 136, 166, 213, 382
SfaNI	GCATC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	266
TasI	AATT	1 cut(s)	126
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.