Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001352.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1794 .. 2971

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtgcaggatagaatatcaacttccgaaccttatagttggggcaataacaaaagaaagtctgtatggtgcttttgacaattgcatcactgcagaacagataatttcttttcttcagcaaaatgcacatccccgtgttgcggagagaatagcatctgtacctgagaatgtcacggatcagatcaggctctgggaaactgatttaaacagagttgagatgactactgcatattattacgatgaatttccatccagggatctctttgacggtgctgttgactatgcgagaagctataatggtttgttatgggaggctccagatgattcaaaaaagatgcgtttggtggtcagggccgaaaaccacgggcacatgcgagaatatctttccggtcaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000438 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb2

Protein Analysis

132

Amino Acids

15.29

Weight (kDa)

5.01

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb2	PF03849	2 - 44	1.6e-14	Transcription factor Tfb2
Tfb2_C	PF18307	59 - 128	1.6e-21	Transcription factor Tfb2 (p52) C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	183, 264
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	2 cut(s)	183, 264
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	369
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	3 cut(s)	93, 161, 324
BpmI	CTGGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	252, 361
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	252, 361
BseGI	GGATG	2 cut(s)	127, 248
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	175, 180, 256
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	183, 264
BssECI	CCNNGG	2 cut(s)	252, 361
BssMI	GATC	3 cut(s)	175, 180, 256
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	127, 248
BstKTI	GATC	3 cut(s)	178, 183, 259
BstMBI	GATC	3 cut(s)	175, 180, 256
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	127, 248
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	4 cut(s)	187, 291, 314, 353
CviKI_1	RGCY	4 cut(s)	187, 291, 314, 353
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	177, 182, 258
DpnII	GATC	3 cut(s)	175, 180, 256
DraI	TTTAAA	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	35, 66, 229, 282, 294, 307, 371
FatI	CATG	1 cut(s)	369
FokI	GGATG	2 cut(s)	114, 235
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	27, 180
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	5 cut(s)	6, 84, 92, 125, 227
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	175, 180, 256
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	169, 174, 175, 238, 265, 330, 334
LweI	GCATC	3 cut(s)	93, 161, 324
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	177, 182, 258
MboI	GATC	3 cut(s)	175, 180, 256
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	79, 102, 242
MnlI	CCTC	1 cut(s)	304
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	175, 180, 256
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	175, 180, 256
Sau96I	GGNCC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	3 cut(s)	33, 163, 293
SfaNI	GCATC	3 cut(s)	93, 161, 324
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	79, 102, 242
SsiI	CCGC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	269
TasI	AATT	3 cut(s)	79, 102, 242
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.