Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001352.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22912 .. 25057

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggatgataatgaagaggtgacagatgagtttcaaggcattataagtagaagtgctatcgccggaactcaactcttgataggaagagttcatatttggtcacagagtttggccttggttgccttcactggtacaggctatgtagatccaaataacaatgccgatcttgcacatagtaaaccaatcgattgcaaatcggagtactggaccgaacgggctctcaaattcaacaccagcgacacctttttccggcccaaaagcaccaccggccgggaagtcggagtgctcgcggcgtcgctacacaagaaatttagaggaaaattgcggctactcgatgccttgtgcggctgcgggattcggtctctgcggtacctggtggtctccggctaccgctggctctgttctcgcactgctccaggcctattgccggcgacggcgcacttagaccacaccactcagtttcgtgtattctcatcttccacctcatttcgatatgttgatgagatacccaatttgttgcagtccagcattactcatcatgtgaggaggagctggttttcgagtcaggctcaggcatcgagtgatgtaactagtgggaatggtatagttgatgtgccattggctcaaaccggtgaaaggcattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

215

Amino Acids

23.81

Weight (kDa)

8.64

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	290
AciI	CCGC	6 cut(s)	290, 325, 345, 351, 367, 391
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	224, 308
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	3 cut(s)	133, 203, 371
AfiI	CCNNNNNNNGG	4 cut(s)	249, 270, 427, 636
AgeI	ACCGGT	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	35, 229
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	372, 415
AluBI	AGCT	1 cut(s)	552
AluI	AGCT	1 cut(s)	552
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	366, 385
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	4 cut(s)	111, 251, 268, 418
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	2 cut(s)	224, 308
AsiGI	ACCGGT	1 cut(s)	629
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	207, 252
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	31, 644
AvaII	GGWCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	374, 417
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	366, 385
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	1 cut(s)	591
BisI	GCNGC	4 cut(s)	291, 326, 346, 349
BlsI	GCNGC	4 cut(s)	292, 327, 347, 350
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	272, 374, 417
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	207, 252
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	3 cut(s)	272, 374, 417
BmsI	GCATC	2 cut(s)	325, 584
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	2 cut(s)	366, 385
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 270, 427, 636
Bse118I	RCCGGY	3 cut(s)	266, 427, 629
Bse1I	ACTGG	2 cut(s)	133, 209
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	374, 417
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	4 cut(s)	249, 270, 427, 636
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	470, 584
BseNI	ACTGG	2 cut(s)	133, 209
BseRI	GAGGAG	2 cut(s)	559, 562
BseX3I	CGGCCG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	113, 253, 270, 420
BshNI	GGYRCC	1 cut(s)	369
BshTI	ACCGGT	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	7 cut(s)	63, 250, 267, 271, 384, 428, 630
BslI	CCNNNNNNNGG	4 cut(s)	249, 270, 427, 636
BsmAI	GTCTC	2 cut(s)	366, 385
BsnI	GGCC	4 cut(s)	113, 253, 270, 420
Bso31I	GGTCTC	2 cut(s)	366, 385
Bsp1286I	GDGCHC	2 cut(s)	220, 288
Bsp143I	GATC	2 cut(s)	145, 163
BspACI	CCGC	6 cut(s)	290, 325, 345, 351, 367, 391
BspANI	GGCC	4 cut(s)	113, 253, 270, 420
BspCNI	CTCAG	2 cut(s)	469, 583
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	2 cut(s)	366, 385
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	3 cut(s)	266, 427, 629
BsrI	ACTGG	2 cut(s)	133, 209
BssAI	RCCGGY	3 cut(s)	266, 427, 629
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	145, 163
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	374, 417
Bst6I	CTCTTC	2 cut(s)	9, 79
BstACI	GRCGYC	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	288, 395, 429
BstDEI	CTNAG	3 cut(s)	442, 456, 570
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	148, 166
BstMAI	GTCTC	2 cut(s)	366, 385
BstMBI	GATC	2 cut(s)	145, 163
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 167, 267
BstNI	CCWGG	2 cut(s)	374, 417
BstSCI	CCNGG	3 cut(s)	270, 372, 415
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BstZI	CGGCCG	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	113, 253, 270, 420
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	126, 408
Cac8I	GCNNGC	3 cut(s)	288, 395, 429
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	3 cut(s)	266, 427, 629
Cfr13I	GGNCC	2 cut(s)	207, 252
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	372
Csp6I	GTAC	3 cut(s)	132, 202, 370
CspAI	ACCGGT	1 cut(s)	629
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	3 cut(s)	132, 202, 370
DdeI	CTNAG	3 cut(s)	442, 456, 570
DpnI	GATC	2 cut(s)	147, 165
DpnII	GATC	2 cut(s)	145, 163
EaeI	YGGCCR	1 cut(s)	268
EagI	CGGCCG	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	9, 79
EarI	CTCTTC	2 cut(s)	9, 79
EclXI	CGGCCG	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	2 cut(s)	366, 385
Eco47I	GGWCC	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	372, 415
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	542
FaiI	YATR	7 cut(s)	44, 93, 141, 174, 495, 540, 605
FatI	CATG	1 cut(s)	538
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	291, 326, 346, 349
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	4 cut(s)	291, 326, 346, 349
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	4 cut(s)	291, 326, 346, 349
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	4 cut(s)	113, 253, 270, 420
HapII	CCGG	7 cut(s)	63, 250, 267, 271, 384, 428, 630
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	2 cut(s)	355, 562
HpaII	CCGG	7 cut(s)	63, 250, 267, 271, 384, 428, 630
HphI	GGTGA	2 cut(s)	31, 644
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	199, 281
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	2 cut(s)	298, 436
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	170, 192, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 167, 267
HpyF3I	CTNAG	3 cut(s)	442, 456, 570
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	437
KpnI	GGTACC	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	145, 163
LmnI	GCTCC	2 cut(s)	418, 549
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	2 cut(s)	325, 584
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	1 cut(s)	591
MaeIII	GTNAC	3 cut(s)	19, 99, 586
MalI	GATC	2 cut(s)	147, 165
MboI	GATC	2 cut(s)	145, 163
MboII	GAAGA	3 cut(s)	26, 96, 468
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	220, 288
MluCI	AATT	4 cut(s)	224, 308, 320, 511
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	5 cut(s)	10, 308, 493, 537, 540
MroNI	GCCGGC	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	7 cut(s)	63, 250, 267, 271, 384, 428, 630
MspR9I	CCNGG	3 cut(s)	272, 374, 417
MvaI	CCWGG	2 cut(s)	374, 417
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	119, 167, 267
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	145, 163
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	542
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	19, 99
PceI	AGGCCT	1 cut(s)	420
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	292, 327, 347, 350
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	372, 415
PspGI	CCWGG	2 cut(s)	372, 415
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	2 cut(s)	207, 252
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	3 cut(s)	133, 203, 371
RsaNI	GTAC	3 cut(s)	132, 202, 370
SatI	GCNGC	4 cut(s)	291, 326, 346, 349
Sau3AI	GATC	2 cut(s)	145, 163
Sau96I	GGNCC	2 cut(s)	207, 252
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	272, 374, 417
SduI	GDGCHC	2 cut(s)	220, 288
SetI	ASST	5 cut(s)	21, 245, 375, 485, 554
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	325, 584
SinI	GGWCC	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	4 cut(s)	224, 308, 320, 511
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	6 cut(s)	290, 325, 345, 351, 367, 391
SspMI	CTAG	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	270, 372, 415
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	5 cut(s)	186, 333, 490, 560, 578
TaqII	GACCGA	2 cut(s)	224, 348
TasI	AATT	4 cut(s)	224, 308, 320, 511
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	293, 328, 348
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	2 cut(s)	133, 415
TseFI	GTSAC	2 cut(s)	19, 99
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	2 cut(s)	19, 99
TspDTI	ATGAA	2 cut(s)	27, 80
TspRI	CASTG	2 cut(s)	133, 415
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	224, 308
XspI	CTAG	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.