Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

266459 .. 271091

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgtgccagggaggtgacttcaccgccggaaacggcaccggaggcgagttgatctacggagccaagtttgccgacgagaacttcgtcaaggagcacaccggccccgcaggaacggaaccaagaattaaatttgagcacacctcagcccagccctatgtccgtgcctgcggccccgacatcctctccatggcgaatgccggccccggcaccaacggatctcagttctacgtctgtactgctaagaccgagtggctcgacggcaagcatgtcttgttcggccaggtcgtcgagggtctcgacgtcgtcaagaacatcgagaaggttgggtctagctctggaaggaccgccaagcctgttgtggtcgctgactgctcgctgcctaaacccaccaccgagcctagcagcccagtcacagcagcatctccaccggcgctactgcaccgcccttcagcctgcccacaggcgcgaacccacctctctgttgccccgaaccggcctcaccagcgcacaactcagcgcgccgcctccaatgccggatctccgaactacagcagcagcagcctcgcctgcgccgatcccagcagcccactgcatcgccgcctgcaatacaccgacctgcacaacccagcagcccaggcgttcgctcatccgtgcagcctgcccaaccgcacagcccaccggtgtctgcccttcgccggtcgcagatcccagcgtcctccagcctcgattccgtcgctactgctccccatacctgcggtgctgcaccttgccgtcgatcacagcagcctaccgaccccgcctagccgcggccttgcaaaacccgccttccttccgccccccacgaccaacatggctgatccaactcgatctgagtttgacattttggactcagaaggacttgagtaccatcgttgggtttccgatatggaaactgcttttgtggcaaaagactacactgccaccattactgatcccaaagatgatgaactatctaataagaactgccaagcaaacaacagagtagcagccaattacaagaggtatagagagtctaaagaaaaagtggctcactatatggaagaaggatttcatgacctagacgtcaaccttacagttgcagactccaatggcaaagaggaacttgctaagtcaatggatgctctcaatcttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

391

Amino Acids

42.11

Weight (kDa)

6.57

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 125	9.1e-22	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1100
AatII	GACGTC	2 cut(s)	303, 1104
Acc36I	ACCTGC	2 cut(s)	624, 760
AccB1I	GGYRCC	2 cut(s)	35, 206
AccII	CGCG	3 cut(s)	466, 519, 807
AclWI	GGATC	6 cut(s)	223, 544, 569, 699, 851, 965
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	300, 1101
AfaI	GTAC	2 cut(s)	235, 905
AfiI	CCNNNNNNNGG	5 cut(s)	187, 492, 695, 806, 913
AgeI	ACCGGT	1 cut(s)	678
AjnI	CCWGG	3 cut(s)	6, 279, 633
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	2 cut(s)	96, 138
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	6 cut(s)	223, 544, 569, 699, 851, 965
AoxI	GGCC	6 cut(s)	100, 169, 199, 277, 494, 808
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspLEI	GCGC	6 cut(s)	433, 466, 507, 519, 521, 572
AspS9I	GGNCC	4 cut(s)	101, 170, 200, 342
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	13, 26, 491
AvaII	GGWCC	1 cut(s)	342
BaeI	ACNNNNGTAYC	2 cut(s)	887, 920
BanI	GGYRCC	2 cut(s)	35, 206
Bbv12I	GWGCWC	2 cut(s)	96, 138
BbvCI	CCTCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	915
BceAI	ACGGC	3 cut(s)	49, 274, 755
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	3 cut(s)	8, 281, 635
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	4 cut(s)	330, 399, 801, 1097
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	434
BfuAI	ACCTGC	2 cut(s)	624, 760
Bme1390I	CCNGG	4 cut(s)	8, 204, 281, 635
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	4 cut(s)	101, 170, 200, 342
BmiI	GGNNCC	7 cut(s)	37, 61, 103, 117, 172, 202, 208
BmrFI	CCNGG	4 cut(s)	8, 204, 281, 635
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	3 cut(s)	428, 601, 1147
BmuI	ACTGGG	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	300, 1101
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	5 cut(s)	7, 186, 202, 633, 805
BsaWI	WCCGGW	2 cut(s)	38, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 492, 695, 806, 913
Bse118I	RCCGGY	6 cut(s)	98, 197, 427, 492, 678, 695
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	3 cut(s)	8, 281, 635
BseDI	CCNNGG	5 cut(s)	7, 186, 202, 633, 805
BseGI	GGATG	3 cut(s)	177, 646, 1162
BseLI	CCNNNNNNNGG	5 cut(s)	187, 492, 695, 806, 913
BseMII	CTCAG	5 cut(s)	156, 233, 527, 861, 903
BseNI	ACTGG	1 cut(s)	407
BsePI	GCGCGC	1 cut(s)	517
BseYI	CCCAGC	4 cut(s)	147, 578, 625, 708
BsgI	GTGCAG	4 cut(s)	422, 602, 673, 746
Bsh1236I	CGCG	3 cut(s)	466, 519, 807
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	6 cut(s)	102, 171, 201, 279, 496, 810
BshNI	GGYRCC	2 cut(s)	35, 206
BshTI	ACCGGT	1 cut(s)	678
BsiEI	CGRYCG	1 cut(s)	700
BsiHKAI	GWGCWC	2 cut(s)	96, 138
BslI	CCNNNNNNNGG	5 cut(s)	187, 492, 695, 806, 913
BsmAI	GTCTC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	6 cut(s)	102, 171, 201, 279, 496, 810
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	96, 138
Bsp143I	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	6 cut(s)	102, 171, 201, 279, 496, 810
BspCNI	CTCAG	5 cut(s)	155, 232, 526, 862, 902
BspFNI	CGCG	3 cut(s)	466, 519, 807
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	7 cut(s)	37, 61, 103, 117, 172, 202, 208
BspMI	ACCTGC	2 cut(s)	624, 760
BspPI	GGATC	6 cut(s)	223, 544, 569, 699, 851, 965
BspT107I	GGYRCC	2 cut(s)	35, 206
BspTNI	GGTCTC	1 cut(s)	299
BsrFI	RCCGGY	6 cut(s)	98, 197, 427, 492, 678, 695
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	6 cut(s)	98, 197, 427, 492, 678, 695
BssECI	CCNNGG	5 cut(s)	7, 186, 202, 633, 805
BssHII	GCGCGC	1 cut(s)	517
BssMI	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
BssNI	GRCGYC	2 cut(s)	300, 1101
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	8, 281, 635
Bst4CI	ACNGT	1 cut(s)	1114
BstACI	GRCGYC	2 cut(s)	300, 1101
BstC8I	GCNNGC	9 cut(s)	166, 199, 263, 374, 454, 519, 568, 602, 659
BstDEI	CTNAG	7 cut(s)	142, 219, 240, 513, 870, 889, 1146
BstDSI	CCRYGG	2 cut(s)	186, 805
BstF5I	GGATG	3 cut(s)	177, 646, 1162
BstFNI	CGCG	3 cut(s)	466, 519, 807
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	6 cut(s)	433, 466, 507, 519, 521, 572
BstKTI	GATC	9 cut(s)	54, 218, 539, 577, 707, 778, 859, 869, 973
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 68, 502, 530, 558, 567, 635, 821, 941
BstNI	CCWGG	3 cut(s)	8, 281, 635
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	4 cut(s)	6, 202, 279, 633
BstSFI	CTRYAG	1 cut(s)	547
BstUI	CGCG	3 cut(s)	466, 519, 807
BstX2I	RGATCY	3 cut(s)	215, 536, 704
BstYI	RGATCY	3 cut(s)	215, 536, 704
BsuRI	GGCC	6 cut(s)	102, 171, 201, 279, 496, 810
BtgI	CCRYGG	2 cut(s)	186, 805
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	3 cut(s)	177, 646, 1162
BtsI	GCAGTG	2 cut(s)	587, 954
BtsIMutI	CAGTG	2 cut(s)	587, 954
BveI	ACCTGC	2 cut(s)	624, 760
Cac8I	GCNNGC	9 cut(s)	166, 199, 263, 374, 454, 519, 568, 602, 659
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	6 cut(s)	433, 466, 507, 519, 521, 572
Cfr10I	RCCGGY	6 cut(s)	98, 197, 427, 492, 678, 695
Cfr13I	GGNCC	4 cut(s)	101, 170, 200, 342
Cfr42I	CCGCGG	1 cut(s)	808
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	234, 904
CspAI	ACCGGT	1 cut(s)	678
CviAII	CATG	4 cut(s)	187, 266, 850, 1091
CviQI	GTAC	2 cut(s)	234, 904
DdeI	CTNAG	7 cut(s)	142, 219, 240, 513, 870, 889, 1146
DpnI	GATC	9 cut(s)	53, 217, 538, 576, 706, 777, 858, 868, 972
DpnII	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
DrdI	GACNNNNNNGTC	1 cut(s)	1100
DseDI	GACNNNNNNGTC	1 cut(s)	1100
EaeI	YGGCCR	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	3 cut(s)	6, 279, 633
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	190, 269, 853, 1094
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 1125, 1157
FatI	CATG	4 cut(s)	186, 265, 849, 1090
FauI	CCCGC	3 cut(s)	112, 804, 829
FokI	GGATG	3 cut(s)	164, 633, 1169
FspBI	CTAG	4 cut(s)	330, 399, 801, 1097
GlaI	GCGC	6 cut(s)	432, 465, 506, 518, 520, 571
GsaI	CCCAGC	4 cut(s)	151, 582, 629, 712
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	6 cut(s)	102, 171, 201, 279, 496, 810
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	6 cut(s)	433, 466, 507, 519, 521, 572
Hin1I	GRCGYC	2 cut(s)	300, 1101
Hin1II	CATG	4 cut(s)	190, 269, 853, 1094
Hin6I	GCGC	6 cut(s)	431, 464, 505, 517, 519, 570
HinP1I	GCGC	6 cut(s)	431, 464, 505, 517, 519, 570
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HinfI	GANTC	4 cut(s)	727, 887, 1049, 1121
HphI	GGTGA	3 cut(s)	13, 26, 491
Hpy166II	GTNNAC	1 cut(s)	1105
Hpy188I	TCNGA	4 cut(s)	543, 871, 892, 922
Hpy188III	TCNNGA	6 cut(s)	296, 307, 316, 336, 1091, 1169
Hpy8I	GTNNAC	1 cut(s)	1105
Hpy99I	CGWCG	7 cut(s)	77, 260, 290, 302, 305, 736, 776
HpyAV	CCTTC	8 cut(s)	313, 333, 456, 700, 835, 839, 887, 1076
HpyCH4III	ACNGT	1 cut(s)	1114
HpyCH4IV	ACGT	3 cut(s)	228, 300, 1101
HpyCH4V	TGCA	8 cut(s)	439, 592, 604, 619, 654, 763, 815, 1118
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 68, 502, 530, 558, 567, 635, 821, 941
HpyF3I	CTNAG	7 cut(s)	142, 219, 240, 513, 870, 889, 1146
HpySE526I	ACGT	3 cut(s)	228, 300, 1101
Hsp92I	GRCGYC	2 cut(s)	300, 1101
Hsp92II	CATG	4 cut(s)	190, 269, 853, 1094
HspAI	GCGC	6 cut(s)	431, 464, 505, 517, 519, 570
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
KspI	CCGCGG	1 cut(s)	808
Kzo9I	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
LmnI	GCTCC	3 cut(s)	59, 91, 747
LweI	GCATC	3 cut(s)	428, 601, 1147
MaeI	CTAG	4 cut(s)	330, 399, 801, 1097
MaeII	ACGT	3 cut(s)	228, 300, 1101
MaeIII	GTNAC	2 cut(s)	14, 409
MalI	GATC	9 cut(s)	53, 217, 538, 576, 706, 777, 858, 868, 972
MboI	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
MboII	GAAGA	1 cut(s)	1091
MflI	RGATCY	3 cut(s)	215, 536, 704
MhlI	GDGCHC	2 cut(s)	96, 138
MluCI	AATT	3 cut(s)	123, 128, 1030
MlyI	GAGTC	3 cut(s)	881, 1058, 1115
MmeI	TCCRAC	1 cut(s)	884
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	1086
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	807
MspR9I	CCNGG	4 cut(s)	8, 204, 281, 635
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	8, 281, 635
MvnI	CGCG	3 cut(s)	466, 519, 807
MwoI	GCNNNNNNNGC	9 cut(s)	42, 68, 502, 530, 558, 567, 635, 821, 941
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	4 cut(s)	190, 269, 853, 1094
NlaIV	GGNNCC	7 cut(s)	37, 61, 103, 117, 172, 202, 208
NmuCI	GTSAC	2 cut(s)	14, 409
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	1090
PauI	GCGCGC	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 282, 294, 570
PctI	GAATGC	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	1 cut(s)	727
PflFI	GACNNNGTC	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	678
PleI	GAGTC	3 cut(s)	881, 1057, 1115
PpsI	GAGTC	3 cut(s)	881, 1057, 1115
Psp6I	CCWGG	3 cut(s)	6, 279, 633
PspFI	CCCAGC	4 cut(s)	147, 578, 625, 708
PspGI	CCWGG	3 cut(s)	6, 279, 633
PspN4I	GGNNCC	7 cut(s)	37, 61, 103, 117, 172, 202, 208
PspPI	GGNCC	4 cut(s)	101, 170, 200, 342
PsuI	RGATCY	3 cut(s)	215, 536, 704
PsyI	GACNNNGTC	1 cut(s)	302
PteI	GCGCGC	1 cut(s)	517
RsaI	GTAC	2 cut(s)	235, 905
RsaNI	GTAC	2 cut(s)	234, 904
SacII	CCGCGG	1 cut(s)	808
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	9 cut(s)	51, 215, 536, 574, 704, 775, 856, 866, 970
Sau96I	GGNCC	4 cut(s)	101, 170, 200, 342
SchI	GAGTC	3 cut(s)	881, 1058, 1115
ScrFI	CCNGG	4 cut(s)	8, 204, 281, 635
SduI	GDGCHC	2 cut(s)	96, 138
SfaNI	GCATC	3 cut(s)	428, 601, 1147
SfcI	CTRYAG	1 cut(s)	547
Sfr303I	CCGCGG	1 cut(s)	808
SgrAI	CRCCGGYG	2 cut(s)	427, 678
SgrBI	CCGCGG	1 cut(s)	808
SinI	GGWCC	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
Sse9I	AATT	3 cut(s)	123, 128, 1030
SspMI	CTAG	4 cut(s)	330, 399, 801, 1097
StyD4I	CCNGG	4 cut(s)	6, 202, 279, 633
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	1114
TaiI	ACGT	3 cut(s)	231, 303, 1104
TaqI	TCGA	7 cut(s)	255, 288, 297, 315, 725, 774, 865
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	123, 128, 1030
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	5 cut(s)	171, 524, 600, 807, 810
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	594, 961
TseFI	GTSAC	2 cut(s)	14, 409
Tsp45I	GTSAC	2 cut(s)	14, 409
TspDTI	ATGAA	2 cut(s)	999, 1079
TspGWI	ACGGA	6 cut(s)	72, 128, 149, 228, 639, 720
TspRI	CASTG	2 cut(s)	594, 961
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 847
XmnI	GAANNNNTTC	1 cut(s)	1086
XspI	CTAG	4 cut(s)	330, 399, 801, 1097
ZraI	GACGTC	2 cut(s)	301, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.