Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0031125

Physical Location & Seq

Genomic Coordinates Forward (+)

41806 .. 42615

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgggtcacagattggaggagttgtatccgacaatacgtttcaagttgggtaatgttctcagtgcttggcacccaagcgacgcgtctgcttatgccatactctcgccgtggaagaatgtatttgattctgcaagttggaaacaacttatgcataggttcatagttcccaagttgcagcttgtcctagaagagttccatgtgaaccctgcaaaccagagtgttgatcagttcaattgggtcatgaggtgggcttatgttattcccagtcacatgatagccgatctgatggtgaagtttttcttccccaaatggataaccgtcttgttttactggctgaaatcaaaccccaactttgaagagattttgcattggtacaagggttggaaagaagtcattccagaggagcttcaagcaaatgaaagcatccgccttcagctcaattggggtcttgacatgatgaaccgggccgttgagggtagggacttagtcgaaccttgccatgtggagcaaagacaatccgattttgaggcacagaaaaaagcagcaaaccaagcaaactccaatgagacaatgatgagcttgagagatgtgattgaagcctttgcgcagcagcacggcttgctatttaagcctaaacccgagaggaggcaagacggtcaccagatatatgcatttggttatgtaaacatcatagtggactctgtcaatcaaaaggtgtatgcccggaaaccaagagaggaagcctggtcccttgtagaccttgcaacattgcttgacatgcacaataactctcttgcaaggagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

269

Amino Acids

31.74

Weight (kDa)

7.17

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCFC	PF07842	3 - 108	4.6e-37	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031125)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8248321.1_g000001 Rmu_sc0001354.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	5 cut(s)	43, 232, 356, 410, 596
AjnI	CCWGG	1 cut(s)	743
AluBI	AGCT	4 cut(s)	178, 406, 436, 579
AluI	AGCT	4 cut(s)	178, 406, 436, 579
Alw26I	GTCTC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	175, 542, 607, 610
Asp700I	GAANNNNTTC	2 cut(s)	296, 393
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	465, 747
AsuC2I	CCSGG	2 cut(s)	464, 724
AsuHPI	GGTGA	2 cut(s)	301, 650
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BanI	GGYRCC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	187, 554, 619, 622
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	3 cut(s)	91, 452, 631
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	745
BciVI	GTATCC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	464, 724
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	4 cut(s)	176, 543, 608, 611
BlsI	GCNGC	4 cut(s)	177, 544, 609, 612
Bme1390I	CCNGG	3 cut(s)	464, 724, 745
Bme18I	GGWCC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	465, 747
BmiI	GGNNCC	2 cut(s)	71, 749
BmrFI	CCNGG	3 cut(s)	464, 724, 745
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	2 cut(s)	464, 724
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse1I	ACTGG	2 cut(s)	264, 335
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	745
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	264, 335
BseRI	GAGGAG	3 cut(s)	32, 416, 658
BseXI	GCAGC	4 cut(s)	187, 554, 619, 622
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	467
BshNI	GGYRCC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	463, 724
BslFI	GGGAC	2 cut(s)	494, 733
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	2 cut(s)	494, 733
BsnI	GGCC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	638
Bsp143I	GATC	2 cut(s)	223, 280
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	71, 749
BspT107I	GGYRCC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	767
BsrI	ACTGG	2 cut(s)	264, 335
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	223, 280
Bst2UI	CCWGG	1 cut(s)	745
Bst4CI	ACNGT	2 cut(s)	319, 656
Bst6I	CTCTTC	2 cut(s)	183, 351
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	2 cut(s)	59, 484
BstDSI	CCRYGG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	2 cut(s)	226, 283
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	223, 280
BstMWI	GCNNNNNNNGC	4 cut(s)	551, 619, 628, 778
BstNI	CCWGG	1 cut(s)	745
BstNSI	RCATGY	1 cut(s)	781
BstPI	GGTNACC	1 cut(s)	656
BstSCI	CCNGG	3 cut(s)	462, 722, 743
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	4 cut(s)	187, 554, 619, 622
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	620
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	465, 747
CseI	GACGC	2 cut(s)	72, 89
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	6 cut(s)	197, 241, 271, 454, 500, 778
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	59, 484
DpnI	GATC	2 cut(s)	225, 282
DpnII	GATC	2 cut(s)	223, 280
Eam1104I	CTCTTC	2 cut(s)	183, 351
EarI	CTCTTC	2 cut(s)	183, 351
EciI	GGCGGA	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	743
EcoT22I	ATGCAT	2 cut(s)	153, 673
FaeI	CATG	6 cut(s)	200, 244, 274, 457, 503, 781
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	494, 733
FatI	CATG	6 cut(s)	196, 240, 270, 453, 499, 777
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	4 cut(s)	176, 543, 608, 611
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	176, 543, 608, 611
FspBI	CTAG	1 cut(s)	185
FspI	TGCGCA	1 cut(s)	606
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	4 cut(s)	176, 543, 608, 611
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	463, 724
HgaI	GACGC	2 cut(s)	72, 89
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	6 cut(s)	200, 244, 274, 457, 503, 781
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	2 cut(s)	125, 698
HpaII	CCGG	2 cut(s)	463, 724
HphI	GGTGA	2 cut(s)	301, 650
Hpy166II	GTNNAC	4 cut(s)	202, 685, 697, 757
Hpy188I	TCNGA	3 cut(s)	30, 285, 520
Hpy188III	TCNNGA	3 cut(s)	241, 398, 449
Hpy8I	GTNNAC	4 cut(s)	202, 685, 697, 757
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	319, 656
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	9 cut(s)	131, 151, 175, 209, 367, 671, 764, 781, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	551, 619, 628, 778
HpyF3I	CTNAG	2 cut(s)	59, 484
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	6 cut(s)	200, 244, 274, 457, 503, 781
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 280
LmnI	GCTCC	2 cut(s)	403, 505
Lsp1109I	GCAGC	4 cut(s)	187, 554, 619, 622
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	3 cut(s)	5, 266, 656
MalI	GATC	2 cut(s)	225, 282
MboI	GATC	2 cut(s)	223, 280
MboII	GAAGA	4 cut(s)	124, 200, 292, 368
MfeI	CAATTG	2 cut(s)	232, 439
MluCI	AATT	2 cut(s)	232, 439
MluI	ACGCGT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	3 cut(s)	53, 116, 362
MnlI	CCTC	8 cut(s)	10, 237, 394, 466, 520, 636, 639, 730
Mph1103I	ATGCAT	2 cut(s)	153, 673
MroXI	GAANNNNTTC	2 cut(s)	296, 393
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	2 cut(s)	463, 724
MspR9I	CCNGG	3 cut(s)	464, 724, 745
MunI	CAATTG	2 cut(s)	232, 439
MvaI	CCWGG	1 cut(s)	745
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	551, 619, 628, 778
NciI	CCSGG	2 cut(s)	464, 724
NdeII	GATC	2 cut(s)	223, 280
NlaIII	CATG	6 cut(s)	200, 244, 274, 457, 503, 781
NlaIV	GGNNCC	2 cut(s)	71, 749
NmuCI	GTSAC	3 cut(s)	5, 266, 656
NsbI	TGCGCA	1 cut(s)	606
NsiI	ATGCAT	2 cut(s)	153, 673
NspI	RCATGY	1 cut(s)	781
PagI	TCATGA	1 cut(s)	240
PdmI	GAANNNNTTC	2 cut(s)	296, 393
PfeI	GAWTC	1 cut(s)	125
PflFI	GACNNNGTC	2 cut(s)	485, 701
PkrI	GCNGC	4 cut(s)	177, 544, 609, 612
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	743
PspEI	GGTNACC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	743
PspN4I	GGNNCC	2 cut(s)	71, 749
PspPI	GGNCC	2 cut(s)	465, 747
PsyI	GACNNNGTC	2 cut(s)	485, 701
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	4 cut(s)	176, 543, 608, 611
Sau3AI	GATC	2 cut(s)	223, 280
Sau96I	GGNCC	2 cut(s)	465, 747
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	3 cut(s)	464, 724, 745
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	2 cut(s)	232, 439
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	462, 722, 743
TaaI	ACNGT	2 cut(s)	319, 656
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	489
TasI	AATT	2 cut(s)	232, 439
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	3 cut(s)	5, 266, 656
TseI	GCWGC	4 cut(s)	175, 542, 607, 610
Tsp45I	GTSAC	3 cut(s)	5, 266, 656
TspDTI	ATGAA	3 cut(s)	148, 432, 473
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	2 cut(s)	485, 701
VpaK11BI	GGWCC	1 cut(s)	747
XceI	RCATGY	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	296, 393
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	2 cut(s)	153, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.