Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001358.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16671 .. 18473

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgatggcacaagatgagaggcttagagccacttctgagatcctaaacagtatgaagatcattaagttacaatcctgggaagagaaattcaaaaactcggtcaattcccttcgagaaagagaattcaaatggttgtctgagggacaatctaggaaggcttatggaactttactctactggatgtcaccaaccattatctcttctgttgtttttctagggtgtatccttttcaaaagtgtccctctgaatgcaagtactatattcacagttttagcttcactaaggagcatgggagaacctgtgagaatgataccagaggctctttcagtaatgatccaagtcaaggtctcatttgatcggctaaatgcttttttgcttgatgatgagttgaaagatgatgagataaggaagctcccatcaccaaattcagatgagagcttgagaatacaaaaaggcattttcagttggtatcctgaatcagcaattcaaactctgaaagaagtgaacctagaagcaaaatcctatgtttctcaaacttcttggatacaaagtgggatagttcgtgataacatactctatgggaagccaatggacaagaacaaatatgagaagatcataaaagcttgtgctttggtgattaatgtttcatcacccaacacccccgggctacgtatgcttcaaggaagaaagcagttaaaggtccttgtgaagaaggtacaagctgctcgtgatgaaatgcaatggggtaaagagggccctcctccattgctcgtaaaaattgctccagatttgtctaaagaagatctcgaagatattgctgcagtatggatatatatatatttatttatgaacactgcagagtcatgttccgtggcattggtgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

295

Amino Acids

33.56

Weight (kDa)

8.93

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	209 - 276	1.9e-12	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	34, 328
AcsI	RAATTY	3 cut(s)	86, 122, 424
AfaI	GTAC	2 cut(s)	256, 717
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	6 cut(s)	91, 127, 232, 391, 488, 680
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	5 cut(s)	275, 412, 438, 623, 722
AluI	AGCT	5 cut(s)	275, 412, 438, 623, 722
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	34, 328
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	754
ApaI	GGGCCC	1 cut(s)	758
ApeKI	GCWGC	2 cut(s)	722, 818
ApoI	RAATTY	3 cut(s)	86, 122, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	700, 754, 755
AsuC2I	CCSGG	2 cut(s)	663, 664
AsuHPI	GGTGA	4 cut(s)	177, 411, 642, 646
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	700
BaeGI	GKGCMC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	758
BauI	CACGAG	1 cut(s)	726
BbvI	GCAGC	2 cut(s)	709, 805
BccI	CCATC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	3 cut(s)	233, 480, 537
BcnI	CCSGG	2 cut(s)	663, 664
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	150, 215, 509
BfmI	CTRYAG	2 cut(s)	819, 855
BfuI	GTATCC	3 cut(s)	233, 480, 537
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	2 cut(s)	723, 819
BlsI	GCNGC	2 cut(s)	724, 820
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	3 cut(s)	76, 663, 664
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	3 cut(s)	700, 754, 755
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	3 cut(s)	76, 663, 664
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	663, 664
BsaAI	YACGTR	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	4 cut(s)	75, 661, 662, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	746, 764
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	4 cut(s)	75, 661, 662, 870
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	2 cut(s)	746, 764
BseMII	CTCAG	2 cut(s)	27, 129
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	709, 805
BshFI	GGCC	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	2 cut(s)	156, 224
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	156, 224
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	756
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	662
Bsp120I	GGGCCC	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	2 cut(s)	28, 130
BspLI	GGNNCC	1 cut(s)	756
BspMAI	CTGCAG	2 cut(s)	823, 859
BspPI	GGATC	2 cut(s)	34, 328
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	746, 764
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	4 cut(s)	75, 661, 662, 870
BssMI	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
BssSI	CACGAG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	50, 268
Bst6I	CTCTTC	2 cut(s)	75, 205
BstBAI	YACGTR	1 cut(s)	671
BstDEI	CTNAG	4 cut(s)	23, 36, 138, 281
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	6 cut(s)	42, 60, 336, 358, 615, 805
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	74, 661, 662
BstSFI	CTRYAG	2 cut(s)	819, 855
BstSLI	GKGCMC	1 cut(s)	758
BstSNI	TACGTA	1 cut(s)	671
BstV1I	GCAGC	2 cut(s)	709, 805
BstX2I	RGATCY	2 cut(s)	39, 802
BstYI	RGATCY	2 cut(s)	39, 802
BsuI	GTATCC	3 cut(s)	233, 480, 537
BsuRI	GGCC	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	870
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	700, 754, 755
Cfr9I	CCCGGG	1 cut(s)	662
Csp6I	GTAC	2 cut(s)	255, 716
CviAII	CATG	2 cut(s)	289, 864
CviQI	GTAC	2 cut(s)	255, 716
DdeI	CTNAG	4 cut(s)	23, 36, 138, 281
DpnI	GATC	6 cut(s)	41, 59, 335, 357, 614, 804
DpnII	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
Eam1104I	CTCTTC	2 cut(s)	75, 205
EarI	CTCTTC	2 cut(s)	75, 205
Eco105I	TACGTA	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	700
Eco88I	CYCGRG	1 cut(s)	662
EcoO109I	RGGNCCY	3 cut(s)	700, 754, 755
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	758
FaeI	CATG	2 cut(s)	292, 867
FaqI	GGGAC	2 cut(s)	156, 224
FatI	CATG	2 cut(s)	288, 863
Fnu4HI	GCNGC	2 cut(s)	723, 819
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	2 cut(s)	723, 819
FspBI	CTAG	3 cut(s)	150, 215, 509
GluI	GCNGC	2 cut(s)	723, 819
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	1 cut(s)	663
Hin1II	CATG	2 cut(s)	292, 867
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	2 cut(s)	476, 860
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	4 cut(s)	177, 411, 642, 646
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	6 cut(s)	37, 139, 246, 430, 495, 887
Hpy188III	TCNNGA	6 cut(s)	113, 473, 563, 728, 785, 806
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	119, 148, 706
HpyCH4III	ACNGT	2 cut(s)	50, 268
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	4 cut(s)	251, 739, 821, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	4 cut(s)	23, 36, 138, 281
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	292, 867
Kzo9I	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
LmnI	GCTCC	3 cut(s)	285, 417, 787
LpnPI	CCDG	8 cut(s)	61, 88, 163, 312, 327, 486, 676, 798
Lsp1109I	GCAGC	2 cut(s)	709, 805
MaeI	CTAG	3 cut(s)	150, 215, 509
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	66, 183
MalI	GATC	6 cut(s)	41, 59, 335, 357, 614, 804
MboI	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
MboII	GAAGA	8 cut(s)	67, 92, 192, 622, 696, 721, 812, 821
MflI	RGATCY	2 cut(s)	39, 802
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	6 cut(s)	86, 103, 122, 424, 483, 777
MlyI	GAGTC	1 cut(s)	869
MnlI	CCTC	7 cut(s)	12, 133, 252, 310, 745, 768, 771
MseI	TTAA	3 cut(s)	63, 639, 695
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	3 cut(s)	76, 663, 664
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	673
NciI	CCSGG	2 cut(s)	663, 664
NdeII	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
NlaIII	CATG	2 cut(s)	292, 867
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	724, 820
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
Ppu21I	YACGTR	1 cut(s)	671
PpuMI	RGGWCCY	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	756
PspOMI	GGGCCC	1 cut(s)	754
PspPI	GGNCC	3 cut(s)	700, 754, 755
PspPPI	RGGWCCY	1 cut(s)	700
PstI	CTGCAG	2 cut(s)	823, 859
PsuI	RGATCY	2 cut(s)	39, 802
RsaI	GTAC	2 cut(s)	256, 717
RsaNI	GTAC	2 cut(s)	255, 716
SaqAI	TTAA	3 cut(s)	63, 639, 695
SatI	GCNGC	2 cut(s)	723, 819
Sau3AI	GATC	6 cut(s)	39, 57, 333, 355, 612, 802
Sau96I	GGNCC	3 cut(s)	700, 754, 755
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	3 cut(s)	76, 663, 664
SduI	GDGCHC	1 cut(s)	758
SfcI	CTRYAG	2 cut(s)	819, 855
SinI	GGWCC	1 cut(s)	700
SmaI	CCCGGG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SnaBI	TACGTA	1 cut(s)	671
Sse9I	AATT	6 cut(s)	86, 103, 122, 424, 483, 777
SspMI	CTAG	3 cut(s)	150, 215, 509
StyD4I	CCNGG	3 cut(s)	74, 661, 662
TaaI	ACNGT	2 cut(s)	50, 268
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	2 cut(s)	112, 807
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	6 cut(s)	86, 103, 122, 424, 483, 777
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	3 cut(s)	63, 639, 695
Tru9I	TTAA	3 cut(s)	63, 639, 695
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	722, 818
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	68, 636, 747, 863
TspGWI	ACGGA	1 cut(s)	859
TspMI	CCCGGG	1 cut(s)	662
TspRI	CASTG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	700
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	3 cut(s)	86, 122, 424
XmaI	CCCGGG	1 cut(s)	662
XspI	CTAG	3 cut(s)	150, 215, 509
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.