Rmu_sc0001398.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001398.1
N/A
Physical Location & Seq
Forward (+)
13634 .. 14187
554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
atgcttggactaagagcgtccgtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaagcacctaacccggatcgtgtgttcgtgcaaacacctacaaagcatgctcatgcagttatcttgatgccacaccatatggacaaaacactcagattggagtatatgtcgatcaaggattcaagagagctatgggtagcgctagaagagcactttggcaatgtccaagattccctcctccctgacttgaagcttcaatggaacaatctgcgctttgctgatttcatgtctgttgctgaagataattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.24

Weight (kDa)

5.79

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AfeI AGCGCT 1 cut(s) 213
AgsI TTSAA 4 cut(s) 51, 195, 262, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 202, 265
AluI AGCT 2 cut(s) 202, 265
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 213
AspLEI GCGC 2 cut(s) 214, 285
AsuC2I CCSGG 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 225
BcnI CCSGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse3DI GCAATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 88, 183
BspCNI CTCAG 1 cut(s) 177
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 238
BssMI GATC 2 cut(s) 88, 183
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 11, 164
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 285
BstKTI GATC 2 cut(s) 91, 186
BstMBI GATC 2 cut(s) 88, 183
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 214, 285
CseI GACGC 1 cut(s) 6
CviAII CATG 3 cut(s) 119, 125, 298
CviJI RGCY 2 cut(s) 202, 265
CviKI_1 RGCY 2 cut(s) 202, 265
DdeI CTNAG 2 cut(s) 11, 164
DpnI GATC 2 cut(s) 90, 185
DpnII GATC 2 cut(s) 88, 183
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 213
FaeI CATG 3 cut(s) 122, 128, 301
FatI CATG 3 cut(s) 118, 124, 297
FauNDI CATATG 1 cut(s) 150
FspBI CTAG 1 cut(s) 215
GlaI GCGC 2 cut(s) 213, 284
HaeII RGCGCY 1 cut(s) 215
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 6
HhaI GCGC 2 cut(s) 214, 285
Hin1II CATG 3 cut(s) 122, 128, 301
Hin6I GCGC 2 cut(s) 212, 283
HinP1I GCGC 2 cut(s) 212, 283
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 191, 242
HpaII CCGG 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 136, 195
HpyCH4V TGCA 2 cut(s) 103, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 11, 164
Hsp92II CATG 3 cut(s) 122, 128, 301
HspAI GCGC 2 cut(s) 212, 283
Kzo9I GATC 2 cut(s) 88, 183
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 2 cut(s) 99, 267
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 90, 185
MboI GATC 2 cut(s) 88, 183
MboII GAAGA 2 cut(s) 230, 323
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 316
MnlI CCTC 3 cut(s) 53, 257, 260
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 150
NdeII GATC 2 cut(s) 88, 183
NlaIII CATG 3 cut(s) 122, 128, 301
NspI RCATGY 1 cut(s) 122
PaeI GCATGC 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 191, 242
RseI CAYNNNNRTG 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 88, 183
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 225
SetI ASST 5 cut(s) 45, 82, 112, 204, 267
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 123
SphI GCATGC 1 cut(s) 122
Sse9I AATT 1 cut(s) 316
SspI AATATT 1 cut(s) 60
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 182
TasI AATT 1 cut(s) 316
TfiI GAWTC 2 cut(s) 191, 242
TspDTI ATGAA 2 cut(s) 286, 309
TspGWI ACGGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.