Rmu_sc0001398.1_g000012

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001398.1
OG0031130
Physical Location & Seq
Reverse (-)
32963 .. 34006
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgaaaagccaacaggtctcgaatctctgctccctccaccacctcaaacaatccctctccgaatccatctccgccgctccctcttctctccacctctccctcaaccgccgcgataacctccatgcctcttctcccgacaactccctcgcctccctatgtatcacctctggtgaccttatcttctacaccctcgacccctcctcccaaaccctacaatccccaattcctcagggtccagcgtccccaattcccgaaaccctaattagacatgtggcttccacgagtgaggcaatggccgaagatctgaggtcgggttcggaaacctatctcagcttctccagccttcggatccagactccgtcttgtgcccacatacctgtctcccatacccgacgtctctcttttgatgagatctggagtgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

141

Amino Acids

15.36

Weight (kDa)

5.93

Isoelectric Point (pI)

80.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031130)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001398.1_g000012
rosa_samantha Rh6DG272200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 77
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 72, 75, 106, 109
AclWI GGATC 2 cut(s) 343, 356
AcoI YGGCCR 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 268
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 22, 385, 401
AlwI GGATC 2 cut(s) 343, 356
AoxI GGCC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 154, 182
AvaII GGWCC 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 370
BamHI GGATCC 1 cut(s) 348
BauI CACGAG 1 cut(s) 280
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 22, 385, 401
BglII AGATCT 2 cut(s) 301, 411
BisI GCNGC 2 cut(s) 75, 109
BlsI GCNGC 2 cut(s) 76, 110
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 234, 350
BpmI CTGGAG 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 242, 296, 343
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 296
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 22, 385, 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 301, 348, 411
BspACI CCGC 4 cut(s) 72, 75, 106, 109
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 3 cut(s) 241, 297, 342
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 234, 350
BspPI GGATC 2 cut(s) 343, 356
BspTNI GGTCTC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 3 cut(s) 301, 348, 411
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 88, 133
BstACI GRCGYC 1 cut(s) 394
BstDEI CTNAG 3 cut(s) 228, 305, 329
BstEII GGTNACC 1 cut(s) 170
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 304, 351, 414
BstMAI GTCTC 3 cut(s) 22, 385, 401
BstMBI GATC 3 cut(s) 301, 348, 411
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 301, 348, 411
BstYI RGATCY 3 cut(s) 301, 348, 411
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 228
CviAII CATG 2 cut(s) 122, 269
CviJI RGCY 5 cut(s) 9, 275, 296, 333, 342
CviKI_1 RGCY 5 cut(s) 9, 275, 296, 333, 342
DdeI CTNAG 3 cut(s) 228, 305, 329
DpnI GATC 3 cut(s) 303, 350, 413
DpnII GATC 3 cut(s) 301, 348, 411
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 88, 133
EarI CTCTTC 2 cut(s) 88, 133
EciI GGCGGA 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 2 cut(s) 125, 272
FaiI YATR 5 cut(s) 123, 157, 270, 374, 387
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 121, 268
Fnu4HI GCNGC 2 cut(s) 75, 109
Fsp4HI GCNGC 2 cut(s) 75, 109
GluI GCNGC 2 cut(s) 75, 109
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 296
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 2 cut(s) 125, 272
HinfI GANTC 3 cut(s) 22, 62, 355
HphI GGTGA 2 cut(s) 154, 182
Hpy188I TCNGA 4 cut(s) 61, 306, 319, 348
Hpy188III TCNNGA 5 cut(s) 19, 134, 251, 352, 415
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 353
HpyCH4IV ACGT 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 228, 305, 329
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 2 cut(s) 125, 272
Kzo9I GATC 3 cut(s) 301, 348, 411
LmnI GCTCC 2 cut(s) 35, 82
LpnPI CCDG 7 cut(s) 153, 215, 249, 352, 365, 390, 400
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 303, 350, 413
MbiI CCGCTC 1 cut(s) 77
MboI GATC 3 cut(s) 301, 348, 411
MboII GAAGA 4 cut(s) 75, 120, 172, 311
MflI RGATCY 3 cut(s) 301, 348, 411
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 222, 246, 261
MlyI GAGTC 1 cut(s) 349
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 3 cut(s) 301, 348, 411
NlaIII CATG 2 cut(s) 125, 272
NlaIV GGNNCC 2 cut(s) 234, 350
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 272
PciI ACATGT 1 cut(s) 268
PfeI GAWTC 2 cut(s) 22, 62
PflFI GACNNNGTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 76, 110
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PscI ACATGT 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 234, 350
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 3 cut(s) 301, 348, 411
PsyI GACNNNGTC 1 cut(s) 358
SatI GCNGC 2 cut(s) 75, 109
Sau3AI GATC 3 cut(s) 301, 348, 411
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 370
SinI GGWCC 1 cut(s) 233
Sse9I AATT 3 cut(s) 222, 246, 261
SsiI CCGC 4 cut(s) 72, 75, 106, 109
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 20, 192
TasI AATT 3 cut(s) 222, 246, 261
TauI GCSGC 2 cut(s) 77, 111
TfiI GAWTC 2 cut(s) 22, 62
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 233
XceI RCATGY 1 cut(s) 272
ZraI GACGTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.