Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001416.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14774 .. 16062

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtccggcatcatgaacagaaacaaagacaatggcaagaagccagccgccgcctccgggcagaactccactgacgtcaacctcaaagtcaagaaccagaaattgaaaacaatgtacttcaggatgaggcgcaatactccgctccaggagcttattgatgtttactgtaagaaaaacgacgtttaccacttccgattcctctttgatggccatgggattaatcccaagctcactgcactccagtctggaatgaaagatggggatgaaatttctgcaatgttgcacgttgacggaggtggtcgacgccacgacgtggagcagttcagagcggttggattcatttatgaagggttcgacgtcgagcttgatgtgcttccatggtttccagcgagctcaccttcgccgcttgctcaaggccgttcgggatgtccagagggtgcatccggcacctgcagcacatcaatcgccccctttccgatgccaatggagcgacgtcctcactttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.03

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	27 - 94	2.1e-14	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
AatII	GACGTC	3 cut(s)	78, 360, 496
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	2 cut(s)	142, 329
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	5 cut(s)	48, 51, 140, 329, 404
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	103
AcyI	GRCGYC	4 cut(s)	75, 304, 357, 493
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	57, 313
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	4 cut(s)	151, 229, 364, 393
AluI	AGCT	4 cut(s)	151, 229, 364, 393
Alw21I	GWGCWC	1 cut(s)	395
AoxI	GGCC	2 cut(s)	208, 415
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	267
AseI	ATTAAT	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	2 cut(s)	200, 251
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	4 cut(s)	48, 51, 404, 454
BlsI	GCNGC	4 cut(s)	49, 52, 405, 455
Bme1390I	CCNGG	2 cut(s)	58, 146
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	58, 146
BmsI	GCATC	3 cut(s)	18, 449, 468
BpmI	CTGGAG	2 cut(s)	128, 224
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	4 cut(s)	75, 304, 357, 493
BsaJI	CCNNGG	2 cut(s)	211, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 313
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	211, 377
BseGI	GGATG	4 cut(s)	129, 268, 431, 440
BseLI	CCNNNNNNNGG	2 cut(s)	57, 313
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	210, 417
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	6, 57, 444
BslI	CCNNNNNNNGG	2 cut(s)	57, 313
BsnI	GGCC	2 cut(s)	210, 417
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp19I	CCATGG	2 cut(s)	211, 377
BspACI	CCGC	5 cut(s)	48, 51, 140, 329, 404
BspANI	GGCC	2 cut(s)	210, 417
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	455
BspMI	ACCTGC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	446
BsrBI	CCGCTC	2 cut(s)	142, 329
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	211, 377
BssNI	GRCGYC	4 cut(s)	75, 304, 357, 493
BssT1I	CCWWGG	2 cut(s)	211, 377
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	167
BstACI	GRCGYC	4 cut(s)	75, 304, 357, 493
BstC8I	GCNNGC	3 cut(s)	45, 391, 408
BstDSI	CCRYGG	2 cut(s)	211, 377
BstF5I	GGATG	4 cut(s)	129, 268, 431, 440
BstHHI	GCGC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 370, 453, 487
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	56, 144
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	210, 417
BtgI	CCRYGG	2 cut(s)	211, 377
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	129, 268, 431, 440
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	69, 231
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	45, 391, 408
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	132
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	13, 212, 378
CviJI	RGCY	8 cut(s)	43, 47, 151, 210, 229, 364, 393, 417
CviKI_1	RGCY	8 cut(s)	43, 47, 151, 210, 229, 364, 393, 417
CviQI	GTAC	1 cut(s)	115
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	211, 377
Eco24I	GRGCYC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	211, 377
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	211, 377
FaeI	CATG	3 cut(s)	16, 215, 381
FaiI	YATR	5 cut(s)	14, 213, 345, 379, 508
FatI	CATG	3 cut(s)	12, 211, 377
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	48, 51, 404, 454
FokI	GGATG	4 cut(s)	136, 275, 427, 438
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	48, 51, 404, 454
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	4 cut(s)	48, 51, 404, 454
GsuI	CTGGAG	2 cut(s)	128, 224
HaeIII	GGCC	2 cut(s)	210, 417
HapII	CCGG	3 cut(s)	6, 57, 444
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	4 cut(s)	75, 304, 357, 493
Hin1II	CATG	3 cut(s)	16, 215, 381
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	3 cut(s)	79, 289, 302
HindII	GTYRAC	3 cut(s)	79, 289, 302
HinfI	GANTC	2 cut(s)	195, 336
HpaII	CCGG	3 cut(s)	6, 57, 444
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	5 cut(s)	79, 163, 184, 289, 302
Hpy188I	TCNGA	3 cut(s)	194, 326, 477
Hpy188III	TCNNGA	6 cut(s)	13, 91, 121, 246, 423, 431
Hpy8I	GTNNAC	5 cut(s)	79, 163, 184, 289, 302
Hpy99I	CGWCG	6 cut(s)	182, 306, 314, 359, 362, 495
HpyAV	CCTTC	2 cut(s)	341, 408
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	6 cut(s)	75, 180, 285, 312, 357, 493
HpyCH4V	TGCA	5 cut(s)	236, 275, 283, 440, 453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 370, 453, 487
HpySE526I	ACGT	6 cut(s)	75, 180, 285, 312, 357, 493
Hsp92I	GRCGYC	4 cut(s)	75, 304, 357, 493
Hsp92II	CATG	3 cut(s)	16, 215, 381
HspAI	GCGC	1 cut(s)	130
LmnI	GCTCC	4 cut(s)	147, 148, 316, 487
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	3 cut(s)	18, 449, 468
MaeII	ACGT	6 cut(s)	75, 180, 285, 312, 357, 493
MbiI	CCGCTC	2 cut(s)	142, 329
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	101, 267
MluNI	TGGCCA	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	64, 92, 120, 209, 287, 427, 507
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	3 cut(s)	6, 57, 444
MspR9I	CCNGG	2 cut(s)	58, 146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	148, 370, 453, 487
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	2 cut(s)	211, 377
NlaIII	CATG	3 cut(s)	16, 215, 381
NlaIV	GGNNCC	1 cut(s)	448
PagI	TCATGA	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	195, 336
PflMI	CCANNNNNTGG	1 cut(s)	313
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	49, 52, 405, 455
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	48, 51, 404, 454
ScrFI	CCNGG	2 cut(s)	58, 146
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	3 cut(s)	18, 449, 468
SfcI	CTRYAG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	2 cut(s)	101, 267
SsiI	CCGC	5 cut(s)	48, 51, 140, 329, 404
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	56, 144
StyI	CCWWGG	2 cut(s)	211, 377
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	6 cut(s)	78, 183, 288, 315, 360, 496
TaqI	TCGA	3 cut(s)	301, 354, 360
TasI	AATT	2 cut(s)	101, 267
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	3 cut(s)	50, 53, 406
TfiI	GAWTC	2 cut(s)	195, 336
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	76, 238
TseI	GCWGC	1 cut(s)	453
TspDTI	ATGAA	5 cut(s)	29, 266, 279, 328, 360
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	76, 238
Van91I	CCANNNNNTGG	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	301
ZraI	GACGTC	3 cut(s)	76, 358, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.