Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1285

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggtagtccaatcgctggagggcgtgggttccgttcagagctccatcgacgttgctgcaaacccacattccgaggacaattcctcgccgaagaagaggagagtcagctctcgcctccaggtcaaacagaaaccccaaaaggaacttctcgtccgccagagagtggaattactcgatgacaacgaacaaggccccagaaagaaacaagcaaatgtcaggggtaggcaaaccggagaggttgccgactcggaggagctcccaaaggccactgactcggttgagaagagtgaccgtgttagggtcaaagagaccctcaggttgttcaacaagcattatctctatttcgtacaggaagaagagaagagggcggtgaaagcagaagcccagaagaaagcttccagagccgcaaagagaggtgcaaaaaaatctaagaagggtgatttgaagaaggcagatacaaaggtggcaaaacgacctgatttgaaggcattaaccaagatgaatgacgaaaaagaaattttgtttccttctaaaagatttggaagcattccaggtattgatgtcgggcatcagttctattctcgggctgaaatggttgctgttggtttccacagccactggctgaatgggattgattatatgggccagtcctatagtaaaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

221

Amino Acids

24.92

Weight (kDa)

9.89

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	179 - 216	1.1e-08	SAD/SRA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	16, 163
AciI	CCGC	3 cut(s)	154, 368, 405
AcsI	RAATTY	1 cut(s)	516
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	16, 163, 298
AgsI	TTSAA	3 cut(s)	325, 445, 484
AjnI	CCWGG	2 cut(s)	117, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	42, 108, 256, 395
AluI	AGCT	4 cut(s)	42, 108, 256, 395
Alw21I	GWGCWC	2 cut(s)	44, 258
Alw26I	GTCTC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	618
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	3 cut(s)	190, 264, 643
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	191, 643
AsuHPI	GGTGA	2 cut(s)	382, 449
AvaI	CYCGRG	1 cut(s)	582
AxyI	CCTNAGG	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanII	GRGCYC	2 cut(s)	44, 258
Bbv12I	GWGCWC	2 cut(s)	44, 258
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	119, 552
BcoDI	GTCTC	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	652
BisI	GCNGC	2 cut(s)	57, 405
BlsI	GCNGC	2 cut(s)	58, 406
Bme1390I	CCNGG	2 cut(s)	119, 552
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	191, 643
BmiI	GGNNCC	2 cut(s)	31, 193
BmrFI	CCNGG	2 cut(s)	119, 552
BmsI	GCATC	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	38, 101
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 163, 298
Bse1I	ACTGG	2 cut(s)	623, 646
Bse21I	CCTNAGG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	119, 552
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	16, 163, 298
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	623, 646
BseRI	GAGGAG	2 cut(s)	112, 266
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	3 cut(s)	192, 266, 645
BsiHKAI	GWGCWC	2 cut(s)	44, 258
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	16, 163, 298
BsmAI	GTCTC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	192, 266, 645
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	2 cut(s)	44, 258
BspACI	CCGC	3 cut(s)	154, 368, 405
BspANI	GGCC	3 cut(s)	192, 266, 645
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	31, 193
BspTNI	GGTCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	623, 646
BssECI	CCNNGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	119, 552
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	4 cut(s)	89, 278, 351, 356
BstDEI	CTNAG	2 cut(s)	314, 429
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 401
BstNI	CCWGG	2 cut(s)	119, 552
BstSCI	CCNGG	2 cut(s)	117, 550
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	192, 266, 645
BtsIMutI	CAGTG	2 cut(s)	267, 616
CaiI	CAGNNNCTG	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	191, 643
Csp6I	GTAC	1 cut(s)	347
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	314, 429
Eam1104I	CTCTTC	4 cut(s)	89, 278, 351, 356
EarI	CTCTTC	4 cut(s)	89, 278, 351, 356
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	2 cut(s)	42, 256
Eco24I	GRGCYC	2 cut(s)	44, 258
Eco31I	GGTCTC	1 cut(s)	302
Eco53kI	GAGCTC	2 cut(s)	42, 256
Eco81I	CCTNAGG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	582
EcoICRI	GAGCTC	2 cut(s)	42, 256
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	117, 550
EcoT38I	GRGCYC	2 cut(s)	44, 258
FaiI	YATR	3 cut(s)	639, 641, 654
Fnu4HI	GCNGC	2 cut(s)	57, 405
FriOI	GRGCYC	2 cut(s)	44, 258
Fsp4HI	GCNGC	2 cut(s)	57, 405
GluI	GCNGC	2 cut(s)	57, 405
GsuI	CTGGAG	2 cut(s)	38, 101
HaeIII	GGCC	3 cut(s)	192, 266, 645
HapII	CCGG	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	3 cut(s)	102, 245, 272
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	382, 449
Hpy188I	TCNGA	3 cut(s)	39, 73, 250
Hpy188III	TCNNGA	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	427, 442, 478, 537
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	59, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 401
HpyF3I	CTNAG	2 cut(s)	314, 429
HpySE526I	ACGT	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	47, 253, 261
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	287
MboII	GAAGA	8 cut(s)	103, 106, 295, 365, 368, 373, 400, 457
MhlI	GDGCHC	2 cut(s)	44, 258
MluCI	AATT	3 cut(s)	79, 167, 516
MlyI	GAGTC	3 cut(s)	111, 239, 266
MseI	TTAA	1 cut(s)	491
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	119, 552
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	119, 552
MwoI	GCNNNNNNNGC	2 cut(s)	374, 401
NlaIV	GGNNCC	2 cut(s)	31, 193
NmuCI	GTSAC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	546
PflMI	CCANNNNNTGG	2 cut(s)	16, 163
PkrI	GCNGC	2 cut(s)	58, 406
PleI	GAGTC	3 cut(s)	110, 239, 266
PpsI	GAGTC	3 cut(s)	110, 239, 266
Psp124BI	GAGCTC	2 cut(s)	44, 258
Psp6I	CCWGG	2 cut(s)	117, 550
PspGI	CCWGG	2 cut(s)	117, 550
PspN4I	GGNNCC	2 cut(s)	31, 193
PspPI	GGNCC	2 cut(s)	191, 643
PstNI	CAGNNNCTG	1 cut(s)	618
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SacI	GAGCTC	2 cut(s)	44, 258
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	2 cut(s)	57, 405
Sau96I	GGNCC	2 cut(s)	191, 643
SchI	GAGTC	3 cut(s)	111, 239, 266
ScrFI	CCNGG	2 cut(s)	119, 552
SduI	GDGCHC	2 cut(s)	44, 258
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	652
Sse9I	AATT	3 cut(s)	79, 167, 516
SsiI	CCGC	3 cut(s)	154, 368, 405
SstI	GAGCTC	2 cut(s)	44, 258
StyD4I	CCNGG	2 cut(s)	117, 550
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	48, 174
TasI	AATT	3 cut(s)	79, 167, 516
TauI	GCSGC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	274, 623
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	274, 623
Van91I	CCANNNNNTGG	2 cut(s)	16, 163
XapI	RAATTY	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.