Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001423.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

107340 .. 116099

Gene Structure 8760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggcgaacgagaagctgctgaggaaaattgcagaggcattcaaggagctggaggcagccgtgaaatcggagaccggcgaagtggaggttgcgccgatctcgcaggcgtgttctctcgtctcgctgctgtttcaagacgggcacggagccagaggcgacgatgggcatggcacagacggcggcgacctgtggctggaggaatcgaacgtagcggtgcgctgccacgagcatggtgatggtcctcaggctccggcgacctgtcactgcgagatatgtggtcgtggtacgccgtcattgtcgagctggccaagttctactaggaaaactcagcgggtcgaaccgatctgggcaatcagagtggtggagttcggccgatattttaaagagtgcccgccgtcggtggcggaggaagacgatgatctgagttcttctgttgagatctggtttggtattcatgtgcgggaaagatttggctggcttctcaatccttggctgcaatttcccgtgatgtttctgagtcacgcggagggtcgattgttggcaacgacgacaagatcgttctccccgtctgttgggtttgctagtgggctggttgatgatgtaccacttgctgatgtgcctgatgttatcgagaagaatgatatctgtatagtgaaaagcatgaagttagattttaatgtcctctctcgtgcaaaaaagatgaagcttataatgcagtatggtgttggactggaaggcgttgaaattgatgctgcgactaaatttgggattaaagtcgctaggattccaagtcatgcaactggaaatgcagcctcatgtgcagaaatggccatttatctcatgttgggccttctccgaaagcaaggtgcccttttagtaaatatagcccgagggggtctcctgaactatgaagctgttctatattacctcgagtccggacacttaggtggcttgggcattgatgttgcttggactgagccatttgatcctgatgatcccattttgaagttcaataatgttctgatcacacctcatgttgcaggagctactgagtattcttttagatccatgtcaaaggtagttggtgatgttggcattcaacttcatgaagggaagcctttgacaggactggagtttgtcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006082 GO:0007588 GO:0008150 GO:0008152 GO:0008465 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0019752 GO:0022607 GO:0030267 GO:0031406 GO:0032501 GO:0032787 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043177 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046983 GO:0048037 GO:0050661 GO:0050662 GO:0051259 GO:0051287 GO:0055114 GO:0065003 GO:0070402 GO:0071704 GO:0071840 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

381

Amino Acids

41.49

Weight (kDa)

5.21

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	206 - 363	3.3e-11	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	287 - 347	2.1e-17	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	866
AccII	CGCG	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	935
AciI	CCGC	7 cut(s)	180, 212, 331, 392, 404, 460, 524
AclWI	GGATC	3 cut(s)	980, 989, 1059
AcoI	YGGCCR	3 cut(s)	305, 370, 828
AcsI	RAATTY	1 cut(s)	761
AfaI	GTAC	2 cut(s)	286, 603
AfiI	CCNNNNNNNGG	4 cut(s)	193, 397, 572, 1124
AgsI	TTSAA	6 cut(s)	43, 134, 743, 1006, 1012, 1100
AleI	CACNNNNGTG	1 cut(s)	945
AluBI	AGCT	6 cut(s)	16, 49, 303, 706, 914, 1046
AluI	AGCT	6 cut(s)	16, 49, 303, 706, 914, 1046
Alw26I	GTCTC	3 cut(s)	65, 124, 902
AlwI	GGATC	3 cut(s)	980, 989, 1059
Ama87I	CYCGRG	2 cut(s)	888, 929
Aor13HI	TCCGGA	1 cut(s)	935
AoxI	GGCC	4 cut(s)	305, 370, 828, 847
ApeKI	GCWGC	7 cut(s)	16, 56, 124, 219, 493, 752, 809
ApoI	RAATTY	1 cut(s)	761
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	2 cut(s)	94, 219
AspS9I	GGNCC	2 cut(s)	239, 847
AsuHPI	GGTGA	2 cut(s)	245, 1097
AvaI	CYCGRG	2 cut(s)	888, 929
AvaII	GGWCC	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	3 cut(s)	144, 392, 871
BalI	TGGCCA	2 cut(s)	307, 830
BanI	GGYRCC	1 cut(s)	866
BauI	CACGAG	2 cut(s)	224, 687
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	7 cut(s)	3, 68, 111, 206, 480, 739, 821
BccI	CCATC	2 cut(s)	155, 230
BceAI	ACGGC	4 cut(s)	44, 193, 274, 379
BclI	TGATCA	1 cut(s)	1023
BcoDI	GTCTC	3 cut(s)	65, 124, 902
BfaI	CTAG	3 cut(s)	318, 582, 780
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	8 cut(s)	17, 57, 125, 181, 220, 494, 753, 810
BlsI	GCNGC	8 cut(s)	18, 58, 126, 182, 221, 495, 754, 811
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	2 cut(s)	888, 929
BmgT120I	GGNCC	2 cut(s)	239, 847
BmiI	GGNNCC	3 cut(s)	148, 249, 868
BmsI	GCATC	1 cut(s)	739
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	882, 914
BpmI	CTGGAG	2 cut(s)	71, 215
Bpu10I	CCTNAGC	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	65, 902
BsaJI	CCNNGG	2 cut(s)	488, 889
BsaWI	WCCGGW	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 397, 572, 1124
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	735, 805, 1134
Bse21I	CCTNAGG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	935
BseDI	CCNNGG	2 cut(s)	488, 889
BseLI	CCNNNNNNNGG	4 cut(s)	193, 397, 572, 1124
BseMII	CTCAG	7 cut(s)	11, 257, 341, 413, 506, 966, 1041
BseNI	ACTGG	3 cut(s)	735, 805, 1134
BseSI	GKGCMC	3 cut(s)	144, 392, 871
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	7 cut(s)	3, 68, 111, 206, 480, 739, 821
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	307, 372, 830, 849
BshNI	GGYRCC	1 cut(s)	866
BsiEI	CGRYCG	1 cut(s)	373
BsiHKCI	CYCGRG	2 cut(s)	888, 929
BsiSI	CCGG	3 cut(s)	75, 251, 936
BslI	CCNNNNNNNGG	4 cut(s)	193, 397, 572, 1124
BsmAI	GTCTC	3 cut(s)	65, 124, 902
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	2 cut(s)	38, 1095
BsnI	GGCC	4 cut(s)	307, 372, 830, 849
Bso31I	GGTCTC	2 cut(s)	65, 902
BsoBI	CYCGRG	2 cut(s)	888, 929
Bsp1286I	GDGCHC	3 cut(s)	144, 392, 871
Bsp13I	TCCGGA	1 cut(s)	935
Bsp143I	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
BspACI	CCGC	7 cut(s)	180, 212, 331, 392, 404, 460, 524
BspANI	GGCC	4 cut(s)	307, 372, 830, 849
BspCNI	CTCAG	7 cut(s)	12, 256, 340, 414, 507, 967, 1042
BspEI	TCCGGA	1 cut(s)	935
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	148, 249, 868
BspPI	GGATC	3 cut(s)	980, 989, 1059
BspT107I	GGYRCC	1 cut(s)	866
BspTNI	GGTCTC	2 cut(s)	65, 902
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	735, 805, 1134
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	488, 889
BssMI	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
BssSI	CACGAG	2 cut(s)	224, 687
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	2 cut(s)	224, 687
BstC8I	GCNNGC	4 cut(s)	105, 305, 392, 476
BstDEI	CTNAG	8 cut(s)	20, 243, 327, 422, 515, 943, 975, 1050
BstENI	CCTNNNNNAGG	1 cut(s)	1122
BstFNI	CGCG	1 cut(s)	524
BstHHI	GCGC	2 cut(s)	94, 219
BstKTI	GATC	9 cut(s)	99, 345, 421, 441, 557, 988, 997, 1026, 1067
BstMAI	GTCTC	3 cut(s)	65, 124, 902
BstMBI	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 177, 712, 818, 827
BstSLI	GKGCMC	3 cut(s)	144, 392, 871
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	7 cut(s)	3, 68, 111, 206, 480, 739, 821
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	438, 1064
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	2 cut(s)	438, 1064
BstZI	CGGCCG	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	307, 372, 830, 849
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	4 cut(s)	105, 305, 392, 476
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	2 cut(s)	94, 219
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	239, 847
Csp6I	GTAC	2 cut(s)	285, 602
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviQI	GTAC	2 cut(s)	285, 602
DdeI	CTNAG	8 cut(s)	20, 243, 327, 422, 515, 943, 975, 1050
DpnI	GATC	9 cut(s)	98, 344, 420, 440, 556, 987, 996, 1025, 1066
DpnII	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
DraI	TTTAAA	1 cut(s)	382
EaeI	YGGCCR	3 cut(s)	305, 370, 828
EagI	CGGCCG	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	419
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	488
Eco31I	GGTCTC	2 cut(s)	65, 902
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	239
Eco52I	CGGCCG	1 cut(s)	370
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	2 cut(s)	888, 929
EcoNI	CCTNNNNNAGG	1 cut(s)	1122
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	124
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FauI	CCCGC	3 cut(s)	324, 399, 453
FbaI	TGATCA	1 cut(s)	1023
Fnu4HI	GCNGC	8 cut(s)	17, 57, 125, 181, 220, 494, 753, 810
Fsp4HI	GCNGC	8 cut(s)	17, 57, 125, 181, 220, 494, 753, 810
FspBI	CTAG	3 cut(s)	318, 582, 780
GlaI	GCGC	2 cut(s)	93, 218
GluI	GCNGC	8 cut(s)	17, 57, 125, 181, 220, 494, 753, 810
GsuI	CTGGAG	2 cut(s)	71, 215
HaeIII	GGCC	4 cut(s)	307, 372, 830, 849
HapII	CCGG	3 cut(s)	75, 251, 936
HhaI	GCGC	2 cut(s)	94, 219
Hin6I	GCGC	2 cut(s)	92, 217
HinP1I	GCGC	2 cut(s)	92, 217
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	4 cut(s)	200, 517, 784, 932
HpaII	CCGG	3 cut(s)	75, 251, 936
HphI	GGTGA	2 cut(s)	245, 1097
Hpy166II	GTNNAC	1 cut(s)	1141
Hpy188I	TCNGA	6 cut(s)	70, 356, 423, 516, 857, 1023
Hpy188III	TCNNGA	6 cut(s)	134, 631, 901, 936, 989, 1106
Hpy8I	GTNNAC	1 cut(s)	1141
Hpy99I	CGWCG	3 cut(s)	161, 400, 550
HpyAV	CCTTC	3 cut(s)	728, 860, 1103
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	8 cut(s)	32, 496, 692, 715, 797, 809, 821, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 177, 712, 818, 827
HpyF3I	CTNAG	8 cut(s)	20, 243, 327, 422, 515, 943, 975, 1050
HpySE526I	ACGT	1 cut(s)	207
HspAI	GCGC	2 cut(s)	92, 217
Kpn2I	TCCGGA	1 cut(s)	935
Ksp22I	TGATCA	1 cut(s)	1023
Kzo9I	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
LmnI	GCTCC	4 cut(s)	46, 146, 253, 1043
Lsp1109I	GCAGC	7 cut(s)	3, 68, 111, 206, 480, 739, 821
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	3 cut(s)	318, 582, 780
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	260, 518
MalI	GATC	9 cut(s)	98, 344, 420, 440, 556, 987, 996, 1025, 1066
MboI	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
MboII	GAAGA	3 cut(s)	420, 422, 646
MflI	RGATCY	2 cut(s)	438, 1064
MhlI	GDGCHC	3 cut(s)	144, 392, 871
MlsI	TGGCCA	2 cut(s)	307, 830
MluCI	AATT	4 cut(s)	27, 497, 744, 761
MluNI	TGGCCA	2 cut(s)	307, 830
MlyI	GAGTC	2 cut(s)	526, 941
MmeI	TCCRAC	1 cut(s)	706
Mox20I	TGGCCA	2 cut(s)	307, 830
MroI	TCCGGA	1 cut(s)	935
MroXI	GAANNNNTTC	1 cut(s)	915
MscI	TGGCCA	2 cut(s)	307, 830
MseI	TTAA	3 cut(s)	381, 675, 771
MslI	CAYNNNNRTG	3 cut(s)	228, 234, 945
Msp20I	TGGCCA	2 cut(s)	307, 830
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	3 cut(s)	75, 251, 936
Mva1269I	GAATGC	2 cut(s)	38, 1095
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	5 cut(s)	100, 177, 712, 818, 827
NdeII	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
NlaIV	GGNNCC	3 cut(s)	148, 249, 868
NmuCI	GTSAC	2 cut(s)	260, 518
OliI	CACNNNNGTG	1 cut(s)	945
PaeR7I	CTCGAG	1 cut(s)	929
PagI	TCATGA	1 cut(s)	1105
PcsI	WCGNNNNNNNCGW	2 cut(s)	554, 563
PctI	GAATGC	2 cut(s)	38, 1095
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	200, 784
PkrI	GCNGC	8 cut(s)	18, 58, 126, 182, 221, 495, 754, 811
PleI	GAGTC	2 cut(s)	525, 940
PpsI	GAGTC	2 cut(s)	525, 940
PsiI	TTATAA	1 cut(s)	710
PspN4I	GGNNCC	3 cut(s)	148, 249, 868
PspPI	GGNCC	2 cut(s)	239, 847
PspXI	VCTCGAGB	1 cut(s)	929
PsuI	RGATCY	2 cut(s)	438, 1064
RsaI	GTAC	2 cut(s)	286, 603
RsaNI	GTAC	2 cut(s)	285, 602
RseI	CAYNNNNRTG	3 cut(s)	228, 234, 945
SaqAI	TTAA	3 cut(s)	381, 675, 771
SatI	GCNGC	8 cut(s)	17, 57, 125, 181, 220, 494, 753, 810
Sau3AI	GATC	9 cut(s)	96, 342, 418, 438, 554, 985, 994, 1023, 1064
Sau96I	GGNCC	2 cut(s)	239, 847
SchI	GAGTC	2 cut(s)	526, 941
SduI	GDGCHC	3 cut(s)	144, 392, 871
SfaNI	GCATC	1 cut(s)	739
Sfr274I	CTCGAG	1 cut(s)	929
SinI	GGWCC	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	929
SmiMI	CAYNNNNRTG	3 cut(s)	228, 234, 945
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	4 cut(s)	27, 497, 744, 761
SsiI	CCGC	7 cut(s)	180, 212, 331, 392, 404, 460, 524
SspMI	CTAG	3 cut(s)	318, 582, 780
StyI	CCWWGG	1 cut(s)	488
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	6 cut(s)	203, 299, 336, 532, 630, 930
TasI	AATT	4 cut(s)	27, 497, 744, 761
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	200, 784
Tru1I	TTAA	3 cut(s)	381, 675, 771
Tru9I	TTAA	3 cut(s)	381, 675, 771
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	2 cut(s)	260, 518
TseI	GCWGC	7 cut(s)	16, 56, 124, 219, 493, 752, 809
Tsp45I	GTSAC	2 cut(s)	260, 518
TspDTI	ATGAA	6 cut(s)	443, 677, 716, 924, 1094, 1122
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	1122
XapI	RAATTY	1 cut(s)	761
XhoI	CTCGAG	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	3 cut(s)	318, 582, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.