Rmu_sc0001425.1_g000034

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001425.1
N/A
Physical Location & Seq
Forward (+)
136276 .. 137367
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atggaaggtccgttcaaagggcatgcccctactggagagttggttcaattctatggcatcgctatttttggggtggatgagcagatgagagtcacaaaggtggagttcttttacgatcctgcagaacttcttggaggactaatgaagggtgccaaaattgaaaattacgatggagatgctgcaaagacaaaaaccaccgccgcctaccttgaagcactcaatccccggaacccagaatcggcagcaccacccaaaaaaccggcagcaccacccccaaaaccggccggaatcaacctgaaccggccaccggaagtgttcaccatcttcttgtccacctttcactgccaccttttgtcagtagctgcacctcgtccccagaatccggaacctgaaaccaccgaaaccggccaaaattcaactgaaccggccactggcgtccacctgacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.03

Weight (kDa)

5.54

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 198, 201
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 4 cut(s) 282, 302, 406, 426
AcsI RAATTY 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 435
AfiI CCNNNNNNNGG 6 cut(s) 17, 238, 280, 307, 382, 431
AgsI TTSAA 5 cut(s) 16, 47, 161, 212, 417
AleI CACNNNNGTG 1 cut(s) 98
AloI GAACNNNNNNTCC 3 cut(s) 27, 28, 59
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
AlwI GGATC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 4 cut(s) 282, 302, 406, 426
ApeKI GCWGC 4 cut(s) 179, 242, 263, 362
ApoI RAATTY 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 149
BbvI GCAGC 4 cut(s) 166, 254, 275, 349
BccI CCATC 2 cut(s) 164, 329
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcnI CCSGG 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 5 cut(s) 180, 201, 243, 264, 363
BlsI GCNGC 5 cut(s) 181, 202, 244, 265, 364
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 3 cut(s) 151, 230, 387
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 66, 166
BpmI CTGGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 307, 382
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 6 cut(s) 17, 238, 280, 307, 382, 431
Bse118I RCCGGY 5 cut(s) 259, 280, 300, 404, 424
Bse1I ACTGG 2 cut(s) 37, 436
BseAI TCCGGA 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 6 cut(s) 17, 238, 280, 307, 382, 431
BseNI ACTGG 2 cut(s) 37, 436
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 4 cut(s) 166, 254, 275, 349
BsgI GTGCAG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 284, 304, 408, 428
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 9 cut(s) 226, 260, 281, 285, 301, 308, 383, 405, 425
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 6 cut(s) 17, 238, 280, 307, 382, 431
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 4 cut(s) 284, 304, 408, 428
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 2 cut(s) 198, 201
BspANI GGCC 4 cut(s) 284, 304, 408, 428
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 151, 230, 387
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 149
BsrFI RCCGGY 5 cut(s) 259, 280, 300, 404, 424
BsrI ACTGG 2 cut(s) 37, 436
BssAI RCCGGY 5 cut(s) 259, 280, 300, 404, 424
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 166, 254, 275, 349
BstZI CGGCCG 1 cut(s) 282
BsuRI GGCC 4 cut(s) 284, 304, 408, 428
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 340, 429
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 362
Cfr10I RCCGGY 5 cut(s) 259, 280, 300, 404, 424
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 424
CviAII CATG 1 cut(s) 23
CviJI RGCY 5 cut(s) 284, 304, 362, 408, 428
CviKI_1 RGCY 5 cut(s) 284, 304, 362, 408, 428
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 4 cut(s) 282, 302, 406, 426
EagI CGGCCG 1 cut(s) 282
EclXI CGGCCG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 8
Eco52I CGGCCG 1 cut(s) 282
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 54
FaqI GGGAC 1 cut(s) 357
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 5 cut(s) 180, 201, 243, 264, 363
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 5 cut(s) 180, 201, 243, 264, 363
GluI GCNGC 5 cut(s) 180, 201, 243, 264, 363
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 4 cut(s) 284, 304, 408, 428
HapII CCGG 9 cut(s) 226, 260, 281, 285, 301, 308, 383, 405, 425
HgaI GACGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 1 cut(s) 26
HinfI GANTC 4 cut(s) 90, 236, 288, 379
HpaII CCGG 9 cut(s) 226, 260, 281, 285, 301, 308, 383, 405, 425
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 318, 333, 439
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 318, 333, 439
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 122, 182, 365
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 1 cut(s) 115
Lsp1109I GCAGC 4 cut(s) 166, 254, 275, 349
LweI GCATC 2 cut(s) 66, 166
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 316
MluCI AATT 4 cut(s) 47, 156, 163, 412
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 2 cut(s) 128, 378
MroI TCCGGA 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 9 cut(s) 226, 260, 281, 285, 301, 308, 383, 405, 425
MspR9I CCNGG 1 cut(s) 226
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 3 cut(s) 151, 230, 387
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 98
PaeI GCATGC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 236, 288, 379
PkrI GCNGC 5 cut(s) 181, 202, 244, 265, 364
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 151, 230, 387
PspPI GGNCC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 98
SatI GCNGC 5 cut(s) 180, 201, 243, 264, 363
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 226
SfaNI GCATC 2 cut(s) 66, 166
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 98
SphI GCATGC 1 cut(s) 26
Sse9I AATT 4 cut(s) 47, 156, 163, 412
SsiI CCGC 2 cut(s) 198, 201
StyD4I CCNGG 1 cut(s) 224
TasI AATT 4 cut(s) 47, 156, 163, 412
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 3 cut(s) 236, 288, 379
TscAI CASTG 2 cut(s) 347, 436
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 4 cut(s) 179, 242, 263, 362
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 2 cut(s) 347, 436
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.