Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001434.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

44194 .. 46480

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgcggagaagaatcatccgcttctgccacgcgtcactctgtactcgtcaatactctagctcatcggaaatcgccggaccgccgccgctcatccgagtatctaaccacgtggccaaattgggcccaccgaaagaaggcccaaagcccaggcagctactctccttgccgccttttcccggtcgacatttgccggggaagaagaagaagaagaagtcataccaagacggcgtcgtttcacgaccctcacacgtcaccgctgtcagttggctcaagtattacttccatgagattgacgacactgccattcggtcccatttcaacaaaggtcttgttcagatggaatgcccaagttcagtttggaaggaagggcaagtgaaacatatgagaaagattaggcctagtgaggtaatggaggaaggtgcaagagtatatgtgcccgtatcgattgaggatagtaaagtttcaaggagatttgattgcataccgagtgagacattgtacccaaatgcggatgagattgactacttgcaaaggcttgtcaagtacaaggtccaactcctgcactctttacatgggtcacccaaggaaaaggaaggcttaatttgtgctcctcttacgaaggtgcatcttgatgatggaaagacagagaggatcatcttggctcatcaatcaggattagaagtttcccaaccggctctaactcaatatcgggtgcttggtcctacgataaatggatgctcatggaatgaattacaaccactcactagccgaaagcatcagctccgtgttcattgtgctgaagcactaggcacaccaattgtgggtgactataagtatgggtggtttgttcaccggagatggaaacaaatgcctcaagtcgatattgagccagcaactggactacaatacaagttgcggaggccagcaggtctggatgtacagaagggaagtgttctatcaaaagtccctcttttacatctacattgtagagagctcgtactccccaatattgccaagttccttgttttattggatcagaagttagacaaccagcaccctgtagatagttcgaagccagatgtccttcgttttgtggcatcaatgccaacccacatgaaacttagttggaatctcatgtcatcgtatttggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

384

Amino Acids

43.72

Weight (kDa)

9.68

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	187 - 266	2.7e-06	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	32
AciI	CCGC	9 cut(s)	4, 19, 80, 83, 86, 167, 255, 509, 916
AclWI	GGATC	2 cut(s)	659, 1041
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	819
AcvI	CACGTG	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	5 cut(s)	43, 500, 545, 939, 999
AfiI	CCNNNNNNNGG	5 cut(s)	134, 176, 508, 821, 896
AflIII	ACRYGT	2 cut(s)	30, 247
AgsI	TTSAA	2 cut(s)	319, 465
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	60, 154, 781, 994
AluI	AGCT	4 cut(s)	60, 154, 781, 994
Alw21I	GWGCWC	2 cut(s)	610, 996
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	659, 1041
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	5 cut(s)	111, 121, 136, 395, 920
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	7 cut(s)	77, 121, 122, 137, 309, 550, 719
AsuC2I	CCSGG	2 cut(s)	177, 192
AsuHPI	GGTGA	4 cut(s)	244, 570, 836, 842
AsuII	TTCGAA	1 cut(s)	1070
AvaII	GGWCC	4 cut(s)	77, 309, 550, 719
BaeGI	GKGCMC	2 cut(s)	125, 438
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	125, 996
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbrPI	CACGTG	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	610, 996
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	331, 629, 852
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	177, 192
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	4 cut(s)	57, 399, 765, 806
BfmI	CTRYAG	1 cut(s)	1059
BfuAI	ACCTGC	1 cut(s)	917
BisI	GCNGC	4 cut(s)	83, 86, 152, 167
BlsI	GCNGC	4 cut(s)	84, 87, 153, 168
Bme1390I	CCNGG	3 cut(s)	148, 177, 192
Bme18I	GGWCC	4 cut(s)	77, 309, 550, 719
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	7 cut(s)	77, 121, 122, 137, 309, 550, 719
BmiI	GGNNCC	2 cut(s)	123, 311
BmrFI	CCNGG	3 cut(s)	148, 177, 192
BmsI	GCATC	4 cut(s)	634, 725, 784, 1106
Bpu14I	TTCGAA	1 cut(s)	1070
BpuEI	CTTGAG	2 cut(s)	254, 858
BpuMI	CCSGG	2 cut(s)	177, 192
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	146, 191, 582
BsaWI	WCCGGW	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 176, 508, 821, 896
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	901
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	146, 191, 582
BseGI	GGATG	5 cut(s)	15, 90, 517, 740, 940
BseLI	CCNNNNNNNGG	5 cut(s)	134, 176, 508, 821, 896
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	1 cut(s)	600
BseSI	GKGCMC	2 cut(s)	125, 438
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	113, 123, 138, 397, 922
BshVI	ATCGAT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	610, 996
BsiSI	CCGG	5 cut(s)	75, 177, 191, 692, 853
BslFI	GGGAC	2 cut(s)	295, 950
BslI	CCNNNNNNNGG	5 cut(s)	134, 176, 508, 821, 896
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	295, 950
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	113, 123, 138, 397, 922
Bsp119I	TTCGAA	1 cut(s)	1070
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	125, 438, 610, 996
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	2 cut(s)	651, 1033
BspACI	CCGC	9 cut(s)	4, 19, 80, 83, 86, 167, 255, 509, 916
BspANI	GGCC	5 cut(s)	113, 123, 138, 397, 922
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	123, 311
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	2 cut(s)	659, 1041
BspT104I	TTCGAA	1 cut(s)	1070
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	691
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	1 cut(s)	901
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	146, 191, 582
BssMI	GATC	2 cut(s)	651, 1033
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	937
BstBAI	YACGTR	1 cut(s)	109
BstBI	TTCGAA	1 cut(s)	1070
BstC8I	GCNNGC	2 cut(s)	891, 924
BstDEI	CTNAG	1 cut(s)	1121
BstEII	GGTNACC	1 cut(s)	576
BstF5I	GGATG	5 cut(s)	15, 90, 517, 740, 940
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	654, 1036
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	651, 1033
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	576
BstSCI	CCNGG	3 cut(s)	146, 175, 190
BstSFI	CTRYAG	1 cut(s)	1059
BstSLI	GKGCMC	2 cut(s)	125, 438
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	5 cut(s)	113, 123, 138, 397, 922
BsuTUI	ATCGAT	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	5 cut(s)	15, 90, 517, 740, 940
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	2 cut(s)	891, 924
CaiI	CAGNNNCTG	1 cut(s)	896
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	7 cut(s)	77, 121, 122, 137, 309, 550, 719
ClaI	ATCGAT	1 cut(s)	443
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	2 cut(s)	21, 217
Csp6I	GTAC	5 cut(s)	42, 499, 544, 938, 998
CspI	CGGWCCG	1 cut(s)	77
CviAII	CATG	5 cut(s)	284, 572, 741, 1114, 1135
CviQI	GTAC	5 cut(s)	42, 499, 544, 938, 998
DdeI	CTNAG	1 cut(s)	1121
DpnI	GATC	2 cut(s)	653, 1035
DpnII	GATC	2 cut(s)	651, 1033
EaeI	YGGCCR	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	994
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	125, 996
Eco47I	GGWCC	4 cut(s)	77, 309, 550, 719
Eco53kI	GAGCTC	1 cut(s)	994
Eco57I	CTGAAG	1 cut(s)	819
Eco72I	CACGTG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	994
EcoO65I	GGTNACC	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	2 cut(s)	125, 996
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	5 cut(s)	287, 575, 744, 1117, 1138
FalI	AAGNNNNNCTT	6 cut(s)	263, 295, 581, 613, 954, 986
FaqI	GGGAC	2 cut(s)	295, 950
FatI	CATG	5 cut(s)	283, 571, 740, 1113, 1134
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	83, 86, 152, 167
FokI	GGATG	5 cut(s)	2, 77, 524, 747, 947
FriOI	GRGCYC	2 cut(s)	125, 996
Fsp4HI	GCNGC	4 cut(s)	83, 86, 152, 167
FspBI	CTAG	4 cut(s)	57, 399, 765, 806
GluI	GCNGC	4 cut(s)	83, 86, 152, 167
HaeIII	GGCC	5 cut(s)	113, 123, 138, 397, 922
HapII	CCGG	5 cut(s)	75, 177, 191, 692, 853
HgaI	GACGC	2 cut(s)	21, 217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	287, 575, 744, 1117, 1138
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	12, 1129
HpaII	CCGG	5 cut(s)	75, 177, 191, 692, 853
HphI	GGTGA	4 cut(s)	244, 570, 836, 842
Hpy166II	GTNNAC	2 cut(s)	182, 850
Hpy188I	TCNGA	4 cut(s)	67, 95, 336, 1038
Hpy188III	TCNNGA	4 cut(s)	237, 629, 672, 932
Hpy8I	GTNNAC	2 cut(s)	182, 850
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	8 cut(s)	128, 355, 359, 410, 587, 613, 937, 1094
HpyCH4IV	ACGT	2 cut(s)	108, 249
HpyCH4V	TGCA	5 cut(s)	422, 480, 529, 562, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	1121
HpySE526I	ACGT	2 cut(s)	108, 249
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	287, 575, 744, 1117, 1138
Kzo9I	GATC	2 cut(s)	651, 1033
LmnI	GCTCC	2 cut(s)	613, 786
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	4 cut(s)	634, 725, 784, 1106
MaeI	CTAG	4 cut(s)	57, 399, 765, 806
MaeII	ACGT	2 cut(s)	108, 249
MaeIII	GTNAC	4 cut(s)	33, 250, 576, 824
MalI	GATC	2 cut(s)	653, 1035
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	651, 1033
MboII	GAAGA	6 cut(s)	21, 208, 211, 214, 217, 220
MfeI	CAATTG	1 cut(s)	816
MhlI	GDGCHC	4 cut(s)	125, 438, 610, 996
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	116, 600, 749, 816
MluI	ACGCGT	1 cut(s)	30
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	577, 1106
MnlI	CCTC	9 cut(s)	253, 397, 406, 442, 621, 642, 882, 912, 978
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	5 cut(s)	75, 177, 191, 692, 853
MspR9I	CCNGG	3 cut(s)	148, 177, 192
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	177, 192
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	2 cut(s)	651, 1033
NlaIII	CATG	5 cut(s)	287, 575, 744, 1117, 1138
NlaIV	GGNNCC	2 cut(s)	123, 311
NmuCI	GTSAC	4 cut(s)	33, 250, 576, 824
NspV	TTCGAA	1 cut(s)	1070
PceI	AGGCCT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	12, 1129
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	4 cut(s)	84, 87, 153, 168
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	146
PspCI	CACGTG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	123, 311
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	7 cut(s)	77, 121, 122, 137, 309, 550, 719
PstNI	CAGNNNCTG	1 cut(s)	896
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	5 cut(s)	43, 500, 545, 939, 999
RsaNI	GTAC	5 cut(s)	42, 499, 544, 938, 998
RseI	CAYNNNNRTG	1 cut(s)	630
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	996
SalI	GTCGAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	4 cut(s)	83, 86, 152, 167
Sau3AI	GATC	2 cut(s)	651, 1033
Sau96I	GGNCC	7 cut(s)	77, 121, 122, 137, 309, 550, 719
ScrFI	CCNGG	3 cut(s)	148, 177, 192
SduI	GDGCHC	4 cut(s)	125, 438, 610, 996
SfaNI	GCATC	4 cut(s)	634, 725, 784, 1106
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	1070
SinI	GGWCC	4 cut(s)	77, 309, 550, 719
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	269, 873
SmoI	CTYRAG	2 cut(s)	269, 873
Sse9I	AATT	4 cut(s)	116, 600, 749, 816
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	9 cut(s)	4, 19, 80, 83, 86, 167, 255, 509, 916
SspI	AATATT	1 cut(s)	1009
SspMI	CTAG	4 cut(s)	57, 399, 765, 806
SstI	GAGCTC	1 cut(s)	996
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	3 cut(s)	146, 175, 190
StyI	CCWWGG	1 cut(s)	582
TaiI	ACGT	2 cut(s)	111, 252
TaqI	TCGA	4 cut(s)	181, 443, 879, 1070
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	4 cut(s)	116, 600, 749, 816
TatI	WGTACW	3 cut(s)	41, 543, 937
TauI	GCSGC	3 cut(s)	85, 88, 169
TfiI	GAWTC	2 cut(s)	12, 1129
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	4 cut(s)	33, 250, 576, 824
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	4 cut(s)	33, 250, 576, 824
TspDTI	ATGAA	3 cut(s)	762, 779, 1130
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	896
VpaK11BI	GGWCC	4 cut(s)	77, 309, 550, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	4 cut(s)	57, 399, 765, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.