Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001438.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

217080 .. 223683

Gene Structure 6604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001438.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgcatccacgtgtcctggttgatggttttgagattgccaaaagtgcaacacttcaatttatcgagaaatttaaaactcctgtggtaatgggcagtgagcctgacaaagaaatcctaaaaatggtagcaaggacaactgtgcgaacaaaggttgagggtcttgtccttgatcatggttctaggcatcctgatatgaagcgacgagcagagaattgttacatcttgacagccaatgtatctctggagtacgagaaaagtaattttgtcgttatcaatcagaagggaattgatcccccatctctggcaagggtagggattattgctctgagaagagcaaagaggagaaatatggaacggttggttttggcttgtggaggggaggcagtgaactctgtagatgatttaactcctgattgccttggctgggctggacttgtatatgagcacgtccttggtgaagagaagaatgtttatgtgaccgatcatcggatgaacatgcagctgcccgatgaggtgtacttgaggtttcccaatagtgtgttggagtacttcaacaagcgagtcgagaagcaggtaggtgctgaggggcatgtgtctcagggccaccaagggccgggtgccgaggtgactgtgcgttctcgggagtgggagaatgaggtgagtcagcgttcccgagtactcactggggagcgccagccccccgaggttcaggaagatgtaaggcagtccccccgagtttcagggggaggggtggaacatggtgccatgaacgagcaatcagagccggaggttgaagtggagatctccgtcgaggaactgtacgaagaagctgaactgcgccagagtgatactagtgctagggctcgactagtgcaagatgccatgttggagcagctagatgttgtttttgcactatgggaaaatccttatcagacgacgcttttcacacaaagaaaaaaaaatttcattgtgtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

325

Amino Acids

36.84

Weight (kDa)

5.46

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	2 cut(s)	617, 761
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	68, 961
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	5 cut(s)	248, 518, 548, 678, 821
AfiI	CCNNNNNNNGG	5 cut(s)	121, 301, 424, 486, 613
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	56, 553, 794
AhlI	ACTAGT	2 cut(s)	851, 868
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	502, 830, 895
AluI	AGCT	3 cut(s)	502, 830, 895
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	4 cut(s)	639, 672, 701, 732
AoxI	GGCC	2 cut(s)	601, 611
ApeKI	GCWGC	3 cut(s)	499, 502, 892
ApoI	RAATTY	2 cut(s)	68, 961
AspLEI	GCGC	2 cut(s)	693, 840
AspS9I	GGNCC	2 cut(s)	601, 611
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	467, 637, 670
AvaI	CYCGRG	4 cut(s)	639, 672, 701, 732
BanI	GGYRCC	2 cut(s)	617, 761
BanII	GRGCYC	1 cut(s)	865
BbrPI	CACGTG	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	489, 511, 904
BccI	CCATC	2 cut(s)	17, 304
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	600
BcuI	ACTAGT	2 cut(s)	851, 868
BfaI	CTAG	5 cut(s)	180, 852, 858, 869, 896
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	3 cut(s)	500, 503, 893
BlsI	GCNGC	3 cut(s)	501, 504, 894
BmcAI	AGTACT	2 cut(s)	548, 678
Bme1390I	CCNGG	2 cut(s)	17, 615
BmeT110I	CYCGRG	4 cut(s)	639, 672, 701, 732
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	601, 611
BmiI	GGNNCC	2 cut(s)	619, 763
BmrFI	CCNGG	2 cut(s)	17, 615
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	13, 193, 868
BmuI	ACTGGG	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	418, 451, 607, 621, 702
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 301, 424, 486, 613
Bse1I	ACTGG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	5 cut(s)	418, 451, 607, 621, 702
BseGI	GGATG	3 cut(s)	4, 184, 495
BseLI	CCNNNNNNNGG	5 cut(s)	121, 301, 424, 486, 613
BseMII	CTCAG	3 cut(s)	317, 573, 611
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	489, 511, 904
BseYI	CCCAGC	1 cut(s)	423
BshFI	GGCC	2 cut(s)	603, 613
BshNI	GGYRCC	2 cut(s)	617, 761
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	4 cut(s)	639, 672, 701, 732
BsiSI	CCGG	2 cut(s)	614, 785
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	5 cut(s)	121, 301, 424, 486, 613
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	603, 613
BsoBI	CYCGRG	4 cut(s)	639, 672, 701, 732
Bsp1286I	GDGCHC	2 cut(s)	447, 865
Bsp143I	GATC	4 cut(s)	169, 289, 481, 801
BspANI	GGCC	2 cut(s)	603, 613
BspCNI	CTCAG	3 cut(s)	318, 574, 610
BspLI	GGNNCC	2 cut(s)	619, 763
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	325
BspT107I	GGYRCC	2 cut(s)	617, 761
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	5 cut(s)	418, 451, 607, 621, 702
BssMI	GATC	4 cut(s)	169, 289, 481, 801
BssT1I	CCWWGG	3 cut(s)	418, 451, 607
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	4 cut(s)	139, 357, 631, 819
Bst6I	CTCTTC	2 cut(s)	325, 453
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	3 cut(s)	326, 582, 597
BstF5I	GGATG	3 cut(s)	4, 184, 495
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	2 cut(s)	693, 840
BstKTI	GATC	4 cut(s)	172, 292, 484, 804
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	4 cut(s)	169, 289, 481, 801
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 781
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	499, 593
BstSCI	CCNGG	2 cut(s)	15, 613
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	489, 511, 904
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	603, 613
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	4, 184, 495
BtsI	GCAGTG	2 cut(s)	100, 390
BtsIMutI	CAGTG	3 cut(s)	100, 390, 681
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	695
CfoI	GCGC	2 cut(s)	693, 840
Cfr13I	GGNCC	2 cut(s)	601, 611
CseI	GACGC	1 cut(s)	946
Csp6I	GTAC	5 cut(s)	247, 517, 547, 677, 820
CviAII	CATG	6 cut(s)	173, 496, 590, 758, 766, 883
CviQI	GTAC	5 cut(s)	247, 517, 547, 677, 820
DdeI	CTNAG	3 cut(s)	326, 582, 597
DpnI	GATC	4 cut(s)	171, 291, 483, 803
DpnII	GATC	4 cut(s)	169, 289, 481, 801
DraI	TTTAAA	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	325, 453
EarI	CTCTTC	2 cut(s)	325, 453
Eco130I	CCWWGG	3 cut(s)	418, 451, 607
Eco24I	GRGCYC	1 cut(s)	865
Eco72I	CACGTG	1 cut(s)	11
Eco88I	CYCGRG	4 cut(s)	639, 672, 701, 732
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	3 cut(s)	418, 451, 607
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	865
ErhI	CCWWGG	3 cut(s)	418, 451, 607
FaeI	CATG	6 cut(s)	176, 499, 593, 761, 769, 886
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	6 cut(s)	172, 495, 589, 757, 765, 882
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	500, 503, 893
FokI	GGATG	2 cut(s)	171, 502
FriOI	GRGCYC	1 cut(s)	865
Fsp4HI	GCNGC	3 cut(s)	500, 503, 893
FspBI	CTAG	5 cut(s)	180, 852, 858, 869, 896
GlaI	GCGC	2 cut(s)	692, 839
GluI	GCNGC	3 cut(s)	500, 503, 893
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	603, 613
HapII	CCGG	2 cut(s)	614, 785
HgaI	GACGC	1 cut(s)	946
HhaI	GCGC	2 cut(s)	693, 840
Hin1II	CATG	6 cut(s)	176, 499, 593, 761, 769, 886
Hin6I	GCGC	2 cut(s)	691, 838
HinP1I	GCGC	2 cut(s)	691, 838
HinfI	GANTC	2 cut(s)	561, 661
HpaII	CCGG	2 cut(s)	614, 785
HphI	GGTGA	3 cut(s)	467, 637, 670
Hpy166II	GTNNAC	2 cut(s)	388, 517
Hpy188I	TCNGA	5 cut(s)	279, 327, 489, 781, 933
Hpy188III	TCNNGA	9 cut(s)	64, 188, 223, 242, 410, 565, 641, 672, 710
Hpy8I	GTNNAC	2 cut(s)	388, 517
Hpy99I	CGWCG	3 cut(s)	204, 812, 940
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	4 cut(s)	139, 357, 631, 819
HpyCH4IV	ACGT	2 cut(s)	10, 447
HpyCH4V	TGCA	5 cut(s)	4, 47, 499, 874, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 781
HpyF3I	CTNAG	3 cut(s)	326, 582, 597
HpySE526I	ACGT	2 cut(s)	10, 447
Hsp92II	CATG	6 cut(s)	176, 499, 593, 761, 769, 886
HspAI	GCGC	2 cut(s)	691, 838
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 289, 481, 801
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	688, 889
Lsp1109I	GCAGC	3 cut(s)	489, 511, 904
LweI	GCATC	3 cut(s)	13, 193, 868
MaeI	CTAG	5 cut(s)	180, 852, 858, 869, 896
MaeII	ACGT	2 cut(s)	10, 447
MaeIII	GTNAC	3 cut(s)	215, 475, 625
MalI	GATC	4 cut(s)	171, 291, 483, 803
MboI	GATC	4 cut(s)	169, 289, 481, 801
MboII	GAAGA	5 cut(s)	342, 470, 475, 725, 836
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	2 cut(s)	447, 865
MluCI	AATT	6 cut(s)	56, 68, 211, 259, 285, 961
MlyI	GAGTC	2 cut(s)	570, 670
MmeI	TCCRAC	2 cut(s)	522, 867
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	72, 404
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	614, 785
MspR9I	CCNGG	2 cut(s)	17, 615
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	44, 781
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	4 cut(s)	169, 289, 481, 801
NlaIII	CATG	6 cut(s)	176, 499, 593, 761, 769, 886
NlaIV	GGNNCC	2 cut(s)	619, 763
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	475, 625
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	499, 593
PciSI	GCTCTTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	501, 504, 894
PleI	GAGTC	2 cut(s)	569, 669
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
PpsI	GAGTC	2 cut(s)	569, 669
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	15
PspCI	CACGTG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	619, 763
PspPI	GGNCC	2 cut(s)	601, 611
PsuI	RGATCY	1 cut(s)	801
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	5 cut(s)	248, 518, 548, 678, 821
RsaNI	GTAC	5 cut(s)	247, 517, 547, 677, 820
RseI	CAYNNNNRTG	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	72, 404
SatI	GCNGC	3 cut(s)	500, 503, 893
Sau3AI	GATC	4 cut(s)	169, 289, 481, 801
Sau96I	GGNCC	2 cut(s)	601, 611
ScaI	AGTACT	2 cut(s)	548, 678
SchI	GAGTC	2 cut(s)	570, 670
ScrFI	CCNGG	2 cut(s)	17, 615
SduI	GDGCHC	2 cut(s)	447, 865
SfaNI	GCATC	3 cut(s)	13, 193, 868
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SpeI	ACTAGT	2 cut(s)	851, 868
Sse9I	AATT	6 cut(s)	56, 68, 211, 259, 285, 961
SspMI	CTAG	5 cut(s)	180, 852, 858, 869, 896
StyD4I	CCNGG	2 cut(s)	15, 613
StyI	CCWWGG	3 cut(s)	418, 451, 607
TaaI	ACNGT	4 cut(s)	139, 357, 631, 819
TaiI	ACGT	2 cut(s)	13, 450
TaqI	TCGA	4 cut(s)	63, 564, 810, 865
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	6 cut(s)	56, 68, 211, 259, 285, 961
TatI	WGTACW	3 cut(s)	516, 546, 676
Tru1I	TTAA	2 cut(s)	72, 404
Tru9I	TTAA	2 cut(s)	72, 404
TscAI	CASTG	3 cut(s)	100, 390, 688
TseFI	GTSAC	2 cut(s)	475, 625
TseI	GCWGC	3 cut(s)	499, 502, 892
Tsp45I	GTSAC	2 cut(s)	475, 625
TspDTI	ATGAA	4 cut(s)	209, 506, 782, 955
TspGWI	ACGGA	1 cut(s)	796
TspRI	CASTG	3 cut(s)	100, 390, 688
XapI	RAATTY	2 cut(s)	68, 961
XceI	RCATGY	2 cut(s)	499, 593
XcmI	CCANNNNNNNNNTGG	2 cut(s)	238, 538
XspI	CTAG	5 cut(s)	180, 852, 858, 869, 896
ZrmI	AGTACT	2 cut(s)	548, 678
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.