Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001460.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2042 .. 3618

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001460.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcaaagttgtgaagaaggaagttcaatactggtgaccacgcgaaaacaagaggttgctaaaattatgagagcagccaacaacatgatccatttagatgagttgaattataaggattgtttggctttgttcaatagcatcgcgtttttggatagggaagaagatgaggctgatgagttgggagatattggtaagaaaattgtgaaacggtgtaaaggtctgcctcttgctgcaaagactttgggcagtctgtggtatacgaaaacaagaaaggaacagtgggatgttcttaatagtaagataagggaattggaagaagttgagaaacaagttttccgaccactgttacttagggggtttctcctctttgatacgctgccatgggatcgattcaatgttcatggttggtggcttagaaccgaaaggaagagaggaacacaaactaagtggtggcaaagcccgaggtggccggaggagaaagaacctagttgcaacctattttggttctcctctttgatacatcaccttgggtggttatggatgatggtggaactcgagcagcgactagatgggacaaggcggtccttgtgcgaccgattccatggccagaggtggcgtaggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

208

Amino Acids

24.97

Weight (kDa)

8.99

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AasI	GACNNNNNNGTC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	2 cut(s)	43, 143
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	2 cut(s)	82, 393
AcoI	YGGCCR	2 cut(s)	467, 604
AgsI	TTSAA	4 cut(s)	27, 106, 133, 394
AlwI	GGATC	2 cut(s)	82, 393
Ama87I	CYCGRG	2 cut(s)	460, 554
AoxI	GGCC	2 cut(s)	467, 604
ApeKI	GCWGC	4 cut(s)	74, 230, 376, 559
AspS9I	GGNCC	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	46, 515
AvaI	CYCGRG	2 cut(s)	460, 554
AvaII	GGWCC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	86, 217, 363, 571
BccI	CCATC	2 cut(s)	538, 563
BfaI	CTAG	2 cut(s)	486, 566
BisI	GCNGC	4 cut(s)	75, 231, 377, 560
BlsI	GCNGC	4 cut(s)	76, 232, 378, 561
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	2 cut(s)	460, 554
BmgT120I	GGNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	380, 461, 526, 601
Bse1I	ACTGG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	388
BseDI	CCNNGG	4 cut(s)	380, 461, 526, 601
BseGI	GGATG	2 cut(s)	289, 546
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	353, 488, 499
BseXI	GCAGC	4 cut(s)	86, 217, 363, 571
Bsh1236I	CGCG	2 cut(s)	43, 143
Bsh1285I	CGRYCG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	469, 606
BshVI	ATCGAT	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	595
BsiHKCI	CYCGRG	2 cut(s)	460, 554
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	469, 606
BsoBI	CYCGRG	2 cut(s)	460, 554
Bsp143I	GATC	2 cut(s)	87, 385
Bsp19I	CCATGG	2 cut(s)	380, 601
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	2 cut(s)	469, 606
BspDI	ATCGAT	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	43, 143
BspPI	GGATC	2 cut(s)	82, 393
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	4 cut(s)	380, 461, 526, 601
BssMI	GATC	2 cut(s)	87, 385
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	3 cut(s)	380, 526, 601
Bst1107I	GTATAC	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	210, 279, 345
Bst6I	CTCTTC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	350, 413, 444
BstDSI	CCRYGG	2 cut(s)	380, 601
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	289, 546
BstFNI	CGCG	2 cut(s)	43, 143
BstKTI	GATC	2 cut(s)	90, 388
BstMBI	GATC	2 cut(s)	87, 385
BstMCI	CGRYCG	1 cut(s)	595
BstPI	GGTNACC	1 cut(s)	34
BstUI	CGCG	2 cut(s)	43, 143
BstV1I	GCAGC	4 cut(s)	86, 217, 363, 571
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	469, 606
BsuTUI	ATCGAT	1 cut(s)	388
BtgI	CCRYGG	2 cut(s)	380, 601
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	289, 546
BtsIMutI	CAGTG	2 cut(s)	284, 341
Cfr13I	GGNCC	1 cut(s)	582
ClaI	ATCGAT	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	428, 463
CviAII	CATG	4 cut(s)	85, 381, 401, 602
CviJI	RGCY	7 cut(s)	77, 125, 170, 412, 459, 469, 606
CviKI_1	RGCY	7 cut(s)	77, 125, 170, 412, 459, 469, 606
DdeI	CTNAG	3 cut(s)	350, 413, 444
DpnI	GATC	2 cut(s)	89, 387
DpnII	GATC	2 cut(s)	87, 385
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	467, 604
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	3 cut(s)	380, 526, 601
Eco47I	GGWCC	1 cut(s)	582
Eco88I	CYCGRG	2 cut(s)	460, 554
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	3 cut(s)	380, 526, 601
ErhI	CCWWGG	3 cut(s)	380, 526, 601
FaeI	CATG	4 cut(s)	88, 384, 404, 605
FaiI	YATR	8 cut(s)	68, 86, 111, 258, 382, 402, 538, 603
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	4 cut(s)	84, 380, 400, 601
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	75, 231, 377, 560
FokI	GGATG	2 cut(s)	296, 553
Fsp4HI	GCNGC	4 cut(s)	75, 231, 377, 560
FspBI	CTAG	2 cut(s)	486, 566
GluI	GCNGC	4 cut(s)	75, 231, 377, 560
HaeIII	GGCC	2 cut(s)	469, 606
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	4 cut(s)	88, 384, 404, 605
HinfI	GANTC	2 cut(s)	390, 597
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	46, 515
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	3 cut(s)	210, 279, 345
HpyCH4V	TGCA	3 cut(s)	4, 233, 492
HpyF3I	CTNAG	3 cut(s)	350, 413, 444
Hsp92II	CATG	4 cut(s)	88, 384, 404, 605
Kzo9I	GATC	2 cut(s)	87, 385
LpnPI	CCDG	3 cut(s)	17, 483, 620
Lsp1109I	GCAGC	4 cut(s)	86, 217, 363, 571
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	486, 566
MaeIII	GTNAC	2 cut(s)	34, 345
MalI	GATC	2 cut(s)	89, 387
MboI	GATC	2 cut(s)	87, 385
MboII	GAAGA	5 cut(s)	26, 170, 173, 326, 439
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	4 cut(s)	63, 106, 198, 308
MluNI	TGGCCA	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	9 cut(s)	46, 160, 234, 374, 425, 456, 466, 520, 603
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	470
MvnI	CGCG	2 cut(s)	43, 143
NcoI	CCATGG	2 cut(s)	380, 601
NdeII	GATC	2 cut(s)	87, 385
NlaIII	CATG	4 cut(s)	88, 384, 404, 605
NmuCI	GTSAC	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	390, 597
PkrI	GCNGC	4 cut(s)	76, 232, 378, 561
PsiI	TTATAA	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	582
PspXI	VCTCGAGB	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	75, 231, 377, 560
Sau3AI	GATC	2 cut(s)	87, 385
Sau96I	GGNCC	1 cut(s)	582
SetI	ASST	7 cut(s)	57, 220, 467, 487, 498, 528, 614
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	63, 106, 198, 308
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	2 cut(s)	486, 566
StyI	CCWWGG	3 cut(s)	380, 526, 601
TaaI	ACNGT	3 cut(s)	210, 279, 345
TaqI	TCGA	2 cut(s)	388, 555
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	4 cut(s)	63, 106, 198, 308
TfiI	GAWTC	2 cut(s)	390, 597
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	284, 348
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	4 cut(s)	74, 230, 376, 559
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	284, 348
VpaK11BI	GGWCC	1 cut(s)	582
XhoI	CTCGAG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	486, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.