Rmu_sc0001460.1_g000005

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001460.1
N/A
Physical Location & Seq
Reverse (-)
23861 .. 24870
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 630 bp
atgccaatcgctgtgtacttaagtattcctccaatttgtaggtattcatgccctatctgctcaaagtccatctatgatatgtccaacttgtggaaaaagcttgatgaactggttgcctcaactccaatgcctcatgcgtacagaaccaaaatggtggggatcctctgcaatgattgtggagctaaaggcgaagtcagttttcacattgtcgcacacaaatgtctcagctgcaattcttacaatactaaacagacacaaggaggtcatggtgcttcatgcttatcagatcatgtggctgagatacaagcccagcagacctcagccgccaccatacccacgcccgctccggcagggtacccaccggcacgacgcgacaccgccacgaaccctaccacgacccagcgctccatgattccgccacccaagtcgaaaccgcctcgactccacaccacgacgctccacgatccacgccgccccgaaatcgaaactgccccaacccagcgccctcaatctgcaaccccgtcgatctgcctacttgacccaccagactgcaccaccacgccccagagaatccgtcgatccagagccgaaaaatcacctgcaaaactttcgagcaaacacccatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010119 GO:0050789 GO:0050794 GO:0065007 GO:1902456
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

9.31

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 26 - 83 1.5e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
Acc36I ACCTGC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 344
AccII CGCG 1 cut(s) 372
AciI CCGC 6 cut(s) 324, 342, 378, 416, 434, 472
AclWI GGATC 4 cut(s) 154, 167, 458, 573
AfaI GTAC 3 cut(s) 17, 140, 356
AfeI AGCGCT 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 1 cut(s) 19
AluBI AGCT 3 cut(s) 100, 182, 228
AluI AGCT 3 cut(s) 100, 182, 228
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 4 cut(s) 154, 167, 458, 573
Aor51HI AGCGCT 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 354
AspLEI GCGC 2 cut(s) 405, 504
AsuHPI GGTGA 1 cut(s) 588
BamHI GGATCC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 77
BcgI CGANNNNNNTGC 4 cut(s) 504, 538, 591, 625
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 628
BfoI RGCGCY 2 cut(s) 406, 505
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 3 cut(s) 229, 324, 472
BlsI GCNGC 3 cut(s) 230, 325, 473
BmiI GGNNCC 2 cut(s) 161, 356
Bpu10I CCTNAGC 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 3 cut(s) 238, 288, 333
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 3 cut(s) 309, 399, 498
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 347, 362
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 227
Bsp143I GATC 5 cut(s) 159, 286, 463, 525, 578
BspACI CCGC 6 cut(s) 324, 342, 378, 416, 434, 472
BspCNI CTCAG 3 cut(s) 237, 289, 332
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 161, 356
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 4 cut(s) 154, 167, 458, 573
BspT107I GGYRCC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 361
BssMI GATC 5 cut(s) 159, 286, 463, 525, 578
BstAFI CTTAAG 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 224, 297, 319
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 2 cut(s) 406, 505
BstHHI GCGC 2 cut(s) 405, 504
BstKTI GATC 5 cut(s) 162, 289, 466, 528, 581
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 159, 286, 463, 525, 578
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 159
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 2 cut(s) 405, 504
Cfr10I RCCGGY 1 cut(s) 361
CseI GACGC 2 cut(s) 378, 463
Csp6I GTAC 3 cut(s) 16, 139, 355
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 6 cut(s) 48, 134, 266, 276, 290, 409
CviJI RGCY 7 cut(s) 100, 182, 228, 296, 308, 323, 587
CviKI_1 RGCY 7 cut(s) 100, 182, 228, 296, 308, 323, 587
CviQI GTAC 3 cut(s) 16, 139, 355
DdeI CTNAG 3 cut(s) 224, 297, 319
DpnI GATC 5 cut(s) 161, 288, 465, 527, 580
DpnII GATC 5 cut(s) 159, 286, 463, 525, 578
EciI GGCGGA 1 cut(s) 405
Eco47III AGCGCT 1 cut(s) 404
FaeI CATG 6 cut(s) 51, 137, 269, 279, 293, 412
FatI CATG 6 cut(s) 47, 133, 265, 275, 289, 408
FauI CCCGC 1 cut(s) 349
Fnu4HI GCNGC 3 cut(s) 229, 324, 472
Fsp4HI GCNGC 3 cut(s) 229, 324, 472
FspBI CTAG 1 cut(s) 628
GlaI GCGC 2 cut(s) 404, 503
GluI GCNGC 3 cut(s) 229, 324, 472
GsaI CCCAGC 3 cut(s) 313, 403, 502
HaeII RGCGCY 2 cut(s) 406, 505
HapII CCGG 2 cut(s) 347, 362
HgaI GACGC 2 cut(s) 378, 463
HhaI GCGC 2 cut(s) 405, 504
Hin1II CATG 6 cut(s) 51, 137, 269, 279, 293, 412
Hin6I GCGC 2 cut(s) 403, 502
HinP1I GCGC 2 cut(s) 403, 502
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 412, 441, 570
HpaII CCGG 2 cut(s) 347, 362
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 582
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 4 cut(s) 372, 457, 526, 579
HpyCH4V TGCA 5 cut(s) 168, 231, 515, 552, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 224, 297, 319
Hsp92II CATG 6 cut(s) 51, 137, 269, 279, 293, 412
HspAI GCGC 2 cut(s) 403, 502
KpnI GGTACC 1 cut(s) 358
Kzo9I GATC 5 cut(s) 159, 286, 463, 525, 578
LmnI GCTCC 4 cut(s) 179, 349, 410, 462
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 628
MalI GATC 5 cut(s) 161, 288, 465, 527, 580
MbiI CCGCTC 1 cut(s) 344
MboI GATC 5 cut(s) 159, 286, 463, 525, 578
MflI RGATCY 1 cut(s) 159
MluCI AATT 2 cut(s) 33, 232
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 8 cut(s) 39, 127, 141, 173, 254, 328, 447, 516
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 2 cut(s) 347, 362
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 5 cut(s) 159, 286, 463, 525, 578
NlaIII CATG 6 cut(s) 51, 137, 269, 279, 293, 412
NlaIV GGNNCC 2 cut(s) 161, 356
PaqCI CACCTGC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 412, 570
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 3 cut(s) 230, 325, 473
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PspFI CCCAGC 3 cut(s) 309, 399, 498
PspN4I GGNNCC 2 cut(s) 161, 356
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 3 cut(s) 17, 140, 356
RsaNI GTAC 3 cut(s) 16, 139, 355
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 229, 324, 472
Sau3AI GATC 5 cut(s) 159, 286, 463, 525, 578
SchI GAGTC 1 cut(s) 435
SetI ASST 7 cut(s) 44, 102, 184, 230, 265, 320, 601
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 2 cut(s) 33, 232
SsiI CCGC 6 cut(s) 324, 342, 378, 416, 434, 472
SspMI CTAG 1 cut(s) 628
TaqI TCGA 6 cut(s) 428, 439, 483, 524, 577, 611
TasI AATT 2 cut(s) 33, 232
TatI WGTACW 1 cut(s) 15
TauI GCSGC 2 cut(s) 326, 474
TfiI GAWTC 2 cut(s) 412, 570
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 3 cut(s) 36, 120, 264
TspGWI ACGGA 1 cut(s) 563
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 19
XspI CTAG 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.