Rmu_sc0001470.1_g000006

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001470.1
N/A
Physical Location & Seq
Forward (+)
27576 .. 37318
9743 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2592 bp
atgtccacccatcagcaagtgatgcccaaaagtaagacaaatactcagacccagatacatataatcatatatgactgtctagacgggaacaactcaaacccagatcaatatagccttggttcaaacactattttgaagatttataatggaatcaattggaatcataccttcaaatggcctgttgtgaatcgagctccaataccttcaaatggcctaccacgaatcgaactccaatcccttcaaatggcctgctgcgaatcgagctccgataccttcaaattgactgctgcgaatcaaaatcgagctcctaactcgaactctggacagaaggttgcagaactcaagcatcttatggattctgaaaagagtaggggaagacttttaaaagcaattttacaggctaagttgtccaaccggataccaggaatacatggccgactgggtgatttaggtgccattgatgagcaatatgatgttgccatatcaacagcttgccctggacttgataatattgtggtggaaacaactggtggagcaatagcttgtgttgagctactccgaagagagcatcttggtgttgctcatttcatgataatggcagaacgtattgcatatggaggaaaccccaaatttccagtggtaacacttgatggtgcagtatttgaaatatctggtactatgagtggtggtggaagtaagccatgtggtagtaagattggccgatctatatgtactactgtagtgtcagaagaagctattacagatgccagaagggggcttgccagtatggctgataaattaaacgatatccgccaacatattgctgatgcagcaaagagatatcaagcctctgaagatgcaattgcacactgggagttggaattagctaaaagcgagaaagagattgacagtttgagttcacaacatagttatcttgaaaagcaaattggttccttggaggctgcatcacagccaaagaaggatgagcttgatcagctaaaaacttttcatacatgcaccaaagagaaacacaaagcagaacgtattgcatatggaggaaaccccaaatttccagtggtaacacttgatggtgcagtatttgaaatatctgtgtcagaagaagctattacagatgccagaagggggcttgccagtatggctgataaattaaacgatatccgccaacatattgctgatgcagcaaagagatatcaagcctctgaagatgcaattgcacactgggagttggaattagctaaaagcgagaaagagattgacagtttgagttcacaacatagttatcttgaaaagcaaattggttccttggaggctgcatcacagccaaagaaggatgagcttgatcagctaaaaaaacttgatagtatcatttctgttgaaggaaataagatcgacgaactcatccaaggatctaagcagcttaaggaaaaggccctggagcttcagcataaaatagaaaatgctggtggtgaaagattaaaagtacagaagtcaaaggtcgataatattaagtccgatattgatgaaaagaacactgaaatcaaccaccacaaaatccagattgagactggccagaaaactataaaggagttgagaaaagtgattcaagattcaaagaagaagaaagaacgacatgacaaggagaaggaaacgttatgtgaaaatttcaaagaaaaagaagagaaggcatctctagttcaagagaactgcgaggaaatacagaagctgattgataaacataaagacgtgttggataaagcaaaatctgagttttgcaatatgaaaaagactctgtatgaattgcgggcatggaaggataaagctgagtttgaactagaagatatgaagaagaaatacaaggatctgaaatttgaggggaaggcttacaagcccaggcttgataagttgcaaattgcccttataaagcatatggatcaaattcataaagatttagtggactctgaaaaggttcaagcaaccttggcagatgagcatcttagttgttgcgaccttaaaagggccattgaaatggcagcactactagaagcacaaatgagagagatgaatccaaatcttgattcaatctcagagttggatgactttatggcaggatttaatgcaatatctatgaagttaaaggaaatgtatcagatgatcacgctgggaggtgatgcagaacttgagctagtcgactccctggatcctttctccgaaggtgttgtcttcagcgtgagaccaccaaagaagagttggaaaaatgtttcaaacttatctggtggtgaaaagacattgagctcattggctctcgtgtttgcactgcatcattacaagcctacgcctctttatgtcatggatgaaattgatgctgccttagactttaagaatgtctccatcgttggtcattacgtgaaggaccagacaaaggatgcacagttcataatcgtaagccttagaaataatatgtttgagctagcggatcgacttgtggggatatacaaaactcataattgcacaaagagcattaccattaacccagggagttttgtgatctgcaatcaagctgctcaagaataa

Protein Analysis

863

Amino Acids

96.57

Weight (kDa)

6.24

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMC_hinge PF06470 141 - 199 6.2e-09 SMC proteins Flexible Hinge Domain
SMC_N PF02463 466 - 845 4.1e-34 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 144, 1940
AccB1I GGYRCC 1 cut(s) 452
AccI GTMKAC 1 cut(s) 2208
AciI CCGC 4 cut(s) 811, 1180, 1822, 2492
AclI AACGTT 1 cut(s) 1670
AclWI GGATC 6 cut(s) 1435, 1887, 1959, 2213, 2226, 2502
AcoI YGGCCR 3 cut(s) 433, 718, 1588
AcsI RAATTY 5 cut(s) 629, 1067, 1681, 1886, 1956
AcuI CTGAAG 4 cut(s) 873, 1242, 1445, 2227
AfaI GTAC 3 cut(s) 676, 733, 1503
AfiI CCNNNNNNNGG 7 cut(s) 174, 209, 244, 774, 1143, 2035, 2440
AflII CTTAAG 1 cut(s) 1439
AflIII ACRYGT 1 cut(s) 1764
AjiI CACGTC 1 cut(s) 1765
AjnI CCWGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
AjuI GAANNNNNNNTTGG 6 cut(s) 930, 962, 1299, 1331, 2080, 2112
AloI GAACNNNNNNTCC 2 cut(s) 2435, 2467
Alw21I GWGCWC 4 cut(s) 196, 266, 307, 2315
Alw26I GTCTC 3 cut(s) 1577, 2245, 2410
AlwI GGATC 6 cut(s) 1435, 1887, 1959, 2213, 2226, 2502
AlwNI CAGNNNCTG 1 cut(s) 1744
AoxI GGCC 8 cut(s) 176, 211, 246, 433, 718, 1449, 1588, 2037
ApoI RAATTY 5 cut(s) 629, 1067, 1681, 1886, 1956
ArsI GACNNNNNNTTYG 2 cut(s) 2223, 2255
Asp700I GAANNNNTTC 1 cut(s) 1986
AspS9I GGNCC 3 cut(s) 1450, 2037, 2431
AsuHPI GGTGA 4 cut(s) 455, 1499, 2198, 2309
AsuNHI GCTAGC 1 cut(s) 2488
AvaII GGWCC 1 cut(s) 2431
BalI TGGCCA 1 cut(s) 1590
BamHI GGATCC 1 cut(s) 2218
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 4 cut(s) 196, 266, 307, 2315
BarI GAAGNNNNNNTAC 2 cut(s) 1856, 1888
BauI CACGAG 1 cut(s) 2324
BbsI GAAGAC 2 cut(s) 382, 2233
Bbv12I GWGCWC 4 cut(s) 196, 266, 307, 2315
BccI CCATC 4 cut(s) 18, 644, 1082, 2417
BciT130I CCWGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
BciVI GTATCC 1 cut(s) 411
BclI TGATCA 3 cut(s) 991, 1360, 2172
BcoDI GTCTC 3 cut(s) 1577, 2245, 2410
BfaI CTAG 6 cut(s) 80, 1712, 1853, 2060, 2204, 2489
BfmI CTRYAG 1 cut(s) 738
BfrI CTTAAG 1 cut(s) 1439
BfuI GTATCC 1 cut(s) 411
BglI GCCNNNNNGGC 2 cut(s) 788, 1157
Bme1390I CCNGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
Bme18I GGWCC 1 cut(s) 2431
BmgBI CACGTC 1 cut(s) 1765
BmgT120I GGNCC 3 cut(s) 1450, 2037, 2431
BmiI GGNNCC 4 cut(s) 454, 952, 1321, 2220
BmrFI CCNGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
BmrI ACTGGG 3 cut(s) 449, 880, 1249
BmtI GCTAGC 1 cut(s) 2492
BmuI ACTGGG 3 cut(s) 449, 880, 1249
BpiI GAAGAC 2 cut(s) 382, 2233
BpmI CTGGAG 1 cut(s) 1475
BpuEI CTTGAG 3 cut(s) 326, 2219, 2568
BsaAI YACGTR 1 cut(s) 2425
BsaBI GATNNNNATC 1 cut(s) 2010
BsaI GGTCTC 1 cut(s) 2245
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 7 cut(s) 174, 209, 244, 774, 1143, 2035, 2440
Bse1I ACTGG 9 cut(s) 444, 532, 635, 783, 875, 1073, 1152, 1244, 1591
Bse8I GATNNNNATC 1 cut(s) 2010
BseBI CCWGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
BseGI GGATG 6 cut(s) 988, 1357, 1419, 2119, 2377, 2449
BseJI GATNNNNATC 1 cut(s) 2010
BseLI CCNNNNNNNGG 7 cut(s) 174, 209, 244, 774, 1143, 2035, 2440
BseMII CTCAG 4 cut(s) 59, 1776, 1833, 2118
BseNI ACTGG 9 cut(s) 444, 532, 635, 783, 875, 1073, 1152, 1244, 1591
BseYI CCCAGC 1 cut(s) 2179
BsgI GTGCAG 2 cut(s) 675, 1113
BshFI GGCC 8 cut(s) 178, 213, 248, 435, 720, 1451, 1590, 2039
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 4 cut(s) 196, 266, 307, 2315
BsiSI CCGG 1 cut(s) 415
BslI CCNNNNNNNGG 7 cut(s) 174, 209, 244, 774, 1143, 2035, 2440
BsmAI GTCTC 3 cut(s) 1577, 2245, 2410
BsnI GGCC 8 cut(s) 178, 213, 248, 435, 720, 1451, 1590, 2039
Bso31I GGTCTC 1 cut(s) 2245
Bsp1286I GDGCHC 4 cut(s) 196, 266, 307, 2315
BspACI CCGC 4 cut(s) 811, 1180, 1822, 2492
BspANI GGCC 8 cut(s) 178, 213, 248, 435, 720, 1451, 1590, 2039
BspCNI CTCAG 4 cut(s) 58, 1777, 1834, 2117
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 4 cut(s) 454, 952, 1321, 2220
BspOI GCTAGC 1 cut(s) 2492
BspPI GGATC 6 cut(s) 1435, 1887, 1959, 2213, 2226, 2502
BspT107I GGYRCC 1 cut(s) 452
BspTI CTTAAG 1 cut(s) 1439
BspTNI GGTCTC 1 cut(s) 2245
BsrI ACTGG 9 cut(s) 444, 532, 635, 783, 875, 1073, 1152, 1244, 1591
BssSI CACGAG 1 cut(s) 2324
BssT1I CCWWGG 5 cut(s) 115, 954, 1323, 1423, 1998
Bst2BI CACGAG 1 cut(s) 2324
Bst2UI CCWGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
Bst4CI ACNGT 5 cut(s) 77, 739, 911, 1280, 2451
Bst6I CTCTTC 3 cut(s) 556, 1692, 2258
BstAFI CTTAAG 1 cut(s) 1439
BstAPI GCANNNNNTGC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 2425
BstC8I GCNNGC 6 cut(s) 250, 493, 780, 1149, 1824, 2490
BstDEI CTNAG 9 cut(s) 45, 402, 1431, 1785, 1842, 2015, 2104, 2389, 2468
BstF5I GGATG 6 cut(s) 988, 1357, 1419, 2119, 2377, 2449
BstMAI GTCTC 3 cut(s) 1577, 2245, 2410
BstNI CCWGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
BstNSI RCATGY 1 cut(s) 1017
BstSCI CCNGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
BstSFI CTRYAG 1 cut(s) 738
BstV2I GAAGAC 2 cut(s) 382, 2233
BstX2I RGATCY 3 cut(s) 1427, 1879, 2218
BstXI CCANNNNNNTGG 1 cut(s) 2047
BstYI RGATCY 3 cut(s) 1427, 1879, 2218
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 8 cut(s) 178, 213, 248, 435, 720, 1451, 1590, 2039
BtrI CACGTC 1 cut(s) 1765
BtsCI GGATG 6 cut(s) 988, 1357, 1419, 2119, 2377, 2449
BtsI GCAGTG 1 cut(s) 2333
BtsIMutI CAGTG 6 cut(s) 642, 868, 1080, 1237, 1551, 2333
Cac8I GCNNGC 6 cut(s) 250, 493, 780, 1149, 1824, 2490
CaiI CAGNNNCTG 1 cut(s) 1744
CciI TCATGA 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 1450, 2037, 2431
Csp6I GTAC 3 cut(s) 675, 732, 1502
CviAII CATG 7 cut(s) 431, 589, 702, 1014, 1652, 1827, 2368
CviQI GTAC 3 cut(s) 675, 732, 1502
DdeI CTNAG 9 cut(s) 45, 402, 1431, 1785, 1842, 2015, 2104, 2389, 2468
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 3 cut(s) 433, 718, 1588
Eam1104I CTCTTC 3 cut(s) 556, 1692, 2258
EarI CTCTTC 3 cut(s) 556, 1692, 2258
EciI GGCGGA 2 cut(s) 800, 1169
Ecl136II GAGCTC 4 cut(s) 194, 264, 305, 2313
Eco130I CCWWGG 5 cut(s) 115, 954, 1323, 1423, 1998
Eco24I GRGCYC 4 cut(s) 196, 266, 307, 2315
Eco31I GGTCTC 1 cut(s) 2245
Eco32I GATATC 4 cut(s) 808, 842, 1177, 1211
Eco47I GGWCC 1 cut(s) 2431
Eco53kI GAGCTC 4 cut(s) 194, 264, 305, 2313
Eco57I CTGAAG 4 cut(s) 873, 1242, 1445, 2227
EcoICRI GAGCTC 4 cut(s) 194, 264, 305, 2313
EcoO109I RGGNCCY 1 cut(s) 1450
EcoRII CCWGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
EcoRV GATATC 4 cut(s) 808, 842, 1177, 1211
EcoT14I CCWWGG 5 cut(s) 115, 954, 1323, 1423, 1998
EcoT38I GRGCYC 4 cut(s) 196, 266, 307, 2315
ErhI CCWWGG 5 cut(s) 115, 954, 1323, 1423, 1998
FaeI CATG 7 cut(s) 434, 592, 705, 1017, 1655, 1830, 2371
FatI CATG 7 cut(s) 430, 588, 701, 1013, 1651, 1826, 2367
FauI CCCGC 1 cut(s) 1815
FauNDI CATATG 3 cut(s) 613, 1051, 1947
FbaI TGATCA 3 cut(s) 991, 1360, 2172
FblI GTMKAC 1 cut(s) 2208
FokI GGATG 6 cut(s) 995, 1364, 1406, 2126, 2384, 2456
FriOI GRGCYC 4 cut(s) 196, 266, 307, 2315
FspBI CTAG 6 cut(s) 80, 1712, 1853, 2060, 2204, 2489
GsaI CCCAGC 1 cut(s) 2183
GsuI CTGGAG 1 cut(s) 1475
HaeIII GGCC 8 cut(s) 178, 213, 248, 435, 720, 1451, 1590, 2039
HapII CCGG 1 cut(s) 415
Hin1II CATG 7 cut(s) 434, 592, 705, 1017, 1655, 1830, 2371
HincII GTYRAC 1 cut(s) 2209
HindII GTYRAC 1 cut(s) 2209
HpaII CCGG 1 cut(s) 415
HphI GGTGA 4 cut(s) 455, 1499, 2198, 2309
Hpy166II GTNNAC 5 cut(s) 6, 920, 1289, 1975, 2209
Hpy8I GTNNAC 5 cut(s) 6, 920, 1289, 1975, 2209
Hpy99I CGWCG 1 cut(s) 1415
HpyCH4III ACNGT 5 cut(s) 77, 739, 911, 1280, 2451
HpyCH4IV ACGT 5 cut(s) 604, 1042, 1670, 1764, 2424
HpyF3I CTNAG 9 cut(s) 45, 402, 1431, 1785, 1842, 2015, 2104, 2389, 2468
HpySE526I ACGT 5 cut(s) 604, 1042, 1670, 1764, 2424
Hsp92II CATG 7 cut(s) 434, 592, 705, 1017, 1655, 1830, 2371
Ksp22I TGATCA 3 cut(s) 991, 1360, 2172
LmnI GCTCC 5 cut(s) 199, 269, 310, 533, 1456
MaeI CTAG 6 cut(s) 80, 1712, 1853, 2060, 2204, 2489
MaeII ACGT 5 cut(s) 604, 1042, 1670, 1764, 2424
MaeIII GTNAC 2 cut(s) 640, 1078
MfeI CAATTG 3 cut(s) 154, 861, 1230
MflI RGATCY 3 cut(s) 1427, 1879, 2218
MhlI GDGCHC 4 cut(s) 196, 266, 307, 2315
MlsI TGGCCA 1 cut(s) 1590
MluNI TGGCCA 1 cut(s) 1590
MlyI GAGTC 3 cut(s) 1801, 1970, 2204
MmeI TCCRAC 6 cut(s) 435, 858, 1227, 1749, 2091, 2249
Mox20I TGGCCA 1 cut(s) 1590
MroXI GAANNNNTTC 1 cut(s) 1986
MscI TGGCCA 1 cut(s) 1590
MslI CAYNNNNRTG 3 cut(s) 573, 593, 2045
Msp20I TGGCCA 1 cut(s) 1590
MspCI CTTAAG 1 cut(s) 1439
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
MunI CAATTG 3 cut(s) 154, 861, 1230
MvaI CCWGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
NdeI CATATG 3 cut(s) 613, 1051, 1947
NheI GCTAGC 1 cut(s) 2488
NlaIII CATG 7 cut(s) 434, 592, 705, 1017, 1655, 1830, 2371
NlaIV GGNNCC 4 cut(s) 454, 952, 1321, 2220
NspI RCATGY 1 cut(s) 1017
PagI TCATGA 1 cut(s) 588
PasI CCCWGGG 1 cut(s) 2552
PdmI GAANNNNTTC 1 cut(s) 1986
PleI GAGTC 3 cut(s) 1801, 1970, 2204
PpsI GAGTC 3 cut(s) 1801, 1970, 2204
Ppu21I YACGTR 1 cut(s) 2425
PsiI TTATAA 2 cut(s) 144, 1940
Psp124BI GAGCTC 4 cut(s) 196, 266, 307, 2315
Psp1406I AACGTT 1 cut(s) 1670
Psp6I CCWGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
PspFI CCCAGC 1 cut(s) 2179
PspGI CCWGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
PspN4I GGNNCC 4 cut(s) 454, 952, 1321, 2220
PspPI GGNCC 3 cut(s) 1450, 2037, 2431
PstNI CAGNNNCTG 1 cut(s) 1744
PsuI RGATCY 3 cut(s) 1427, 1879, 2218
RsaI GTAC 3 cut(s) 676, 733, 1503
RsaNI GTAC 3 cut(s) 675, 732, 1502
RseI CAYNNNNRTG 3 cut(s) 573, 593, 2045
SacI GAGCTC 4 cut(s) 196, 266, 307, 2315
SalI GTCGAC 1 cut(s) 2207
Sau96I GGNCC 3 cut(s) 1450, 2037, 2431
SchI GAGTC 3 cut(s) 1801, 1970, 2204
ScrFI CCNGG 6 cut(s) 423, 498, 1454, 1912, 2216, 2553
SduI GDGCHC 4 cut(s) 196, 266, 307, 2315
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 2431
SmiMI CAYNNNNRTG 3 cut(s) 573, 593, 2045
SmlI CTYRAG 4 cut(s) 341, 1439, 2198, 2583
SmoI CTYRAG 4 cut(s) 341, 1439, 2198, 2583
SsiI CCGC 4 cut(s) 811, 1180, 1822, 2492
SspI AATATT 2 cut(s) 511, 1525
SspMI CTAG 6 cut(s) 80, 1712, 1853, 2060, 2204, 2489
SstI GAGCTC 4 cut(s) 196, 266, 307, 2315
StyD4I CCNGG 6 cut(s) 421, 496, 1452, 1910, 2214, 2551
StyI CCWWGG 5 cut(s) 115, 954, 1323, 1423, 1998
TaaI ACNGT 5 cut(s) 77, 739, 911, 1280, 2451
TaiI ACGT 5 cut(s) 607, 1045, 1673, 1767, 2427
TaqI TCGA 9 cut(s) 190, 225, 260, 301, 314, 1410, 1518, 2208, 2497
TatI WGTACW 2 cut(s) 731, 1501
TscAI CASTG 6 cut(s) 642, 875, 1080, 1244, 1558, 2340
TspRI CASTG 6 cut(s) 642, 875, 1080, 1244, 1558, 2340
Vha464I CTTAAG 1 cut(s) 1439
VpaK11BI GGWCC 1 cut(s) 2431
XapI RAATTY 5 cut(s) 629, 1067, 1681, 1886, 1956
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 1017
XcmI CCANNNNNNNNNTGG 4 cut(s) 634, 1072, 1583, 2265
XmiI GTMKAC 1 cut(s) 2208
XmnI GAANNNNTTC 1 cut(s) 1986
XspI CTAG 6 cut(s) 80, 1712, 1853, 2060, 2204, 2489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.