Rmu_sc0001483.1_g000016

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001483.1
N/A
Physical Location & Seq
Reverse (-)
97455 .. 98206
752 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atgagtcctatccctttaagaagccggcctcaatctaaaatagatcttttaattcctgctgtcactccaaaagtttcccaacctccgaaagtggcagggtctagtgggaaggcacaagttagttctagttctcaagccagcccgacagtttctagtcagtctattagtgctagcaaagaaaaaggagataagtcttgtagaagttcgtcaaagcaggatgttgaagttcaagataaaggaacaaaacggaagatcgaggagaaagaacataaagaattaattctgatgcctcatgtgaaagggattattaacagcatagttttcccaccttgggagaatacctgctttgtcactggtggtagtgatcatgctgttgtactctggaaagagacggatgcagaaaatgtctggaaaccaaagcaattgcataggagtatacattcatctgctattatcggcgttgctgggatgtggcaaaagcaaattatactatctgtgggagcagacaagaggattgttggcttcgatgctaatatggaaagaacagagtttaagcatcagatagatagtaaatgcatgagtgttttgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.58

Weight (kDa)

9.47

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AccI GTMKAC 1 cut(s) 436
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 224, 230
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 1 cut(s) 26
AseI ATTAAT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 279
AsuNHI GCTAGC 1 cut(s) 170
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 4 cut(s) 102, 126, 153, 171
BfuAI ACCTGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 43
BmsI GCATC 4 cut(s) 276, 385, 517, 565
BmtI GCTAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 3 cut(s) 223, 400, 474
BseLI CCNNNNNNNGG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 464
BshFI GGCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 43, 252, 364
BspANI GGCC 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 350
BspOI GCTAGC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 3 cut(s) 43, 252, 364
BssNAI GTATAC 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 329
Bst1107I GTATAC 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 26, 139, 172
BstF5I GGATG 3 cut(s) 223, 400, 474
BstKTI GATC 3 cut(s) 46, 255, 367
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 43, 252, 364
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 223, 400, 474
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 26, 139, 172
Cfr10I RCCGGY 1 cut(s) 24
Csp6I GTAC 1 cut(s) 377
CviAII CATG 4 cut(s) 293, 368, 577, 591
CviJI RGCY 5 cut(s) 24, 28, 137, 141, 522
CviKI_1 RGCY 5 cut(s) 24, 28, 137, 141, 522
CviQI GTAC 1 cut(s) 377
DpnI GATC 3 cut(s) 45, 254, 366
DpnII GATC 3 cut(s) 43, 252, 364
Eco130I CCWWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 296, 371, 580, 594
FatI CATG 4 cut(s) 292, 367, 576, 590
FbaI TGATCA 1 cut(s) 364
FblI GTMKAC 1 cut(s) 436
FokI GGATG 3 cut(s) 230, 407, 481
FspBI CTAG 4 cut(s) 102, 126, 153, 171
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 25
Hin1II CATG 4 cut(s) 296, 371, 580, 594
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 87, 285, 561
Hpy188III TCNNGA 3 cut(s) 230, 382, 409
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 398, 427, 576
Hsp92II CATG 4 cut(s) 296, 371, 580, 594
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 3 cut(s) 43, 252, 364
LmnI GCTCC 1 cut(s) 500
LweI GCATC 4 cut(s) 276, 385, 517, 565
MaeI CTAG 4 cut(s) 102, 126, 153, 171
MaeIII GTNAC 2 cut(s) 61, 349
MalI GATC 3 cut(s) 45, 254, 366
MboI GATC 3 cut(s) 43, 252, 364
MboII GAAGA 1 cut(s) 262
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 43
MluCI AATT 5 cut(s) 51, 275, 279, 422, 483
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 39, 93, 250, 300, 504
Mph1103I ATGCAT 1 cut(s) 578
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 5 cut(s) 17, 50, 278, 309, 552
MspI CCGG 1 cut(s) 25
MunI CAATTG 1 cut(s) 422
NaeI GCCGGC 1 cut(s) 26
NdeII GATC 3 cut(s) 43, 252, 364
NgoMIV GCCGGC 1 cut(s) 24
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 4 cut(s) 296, 371, 580, 594
NmuCI GTSAC 2 cut(s) 61, 349
NsiI ATGCAT 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 279
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SaqAI TTAA 5 cut(s) 17, 50, 278, 309, 552
Sau3AI GATC 3 cut(s) 43, 252, 364
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 85, 331, 344
SfaNI GCATC 4 cut(s) 276, 385, 517, 565
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 5 cut(s) 51, 275, 279, 422, 483
SspMI CTAG 4 cut(s) 102, 126, 153, 171
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 255, 525
TasI AATT 5 cut(s) 51, 275, 279, 422, 483
TatI WGTACW 1 cut(s) 376
Tru1I TTAA 5 cut(s) 17, 50, 278, 309, 552
Tru9I TTAA 5 cut(s) 17, 50, 278, 309, 552
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 61, 349
Tsp45I GTSAC 2 cut(s) 61, 349
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 2 cut(s) 262, 407
TspRI CASTG 1 cut(s) 358
VspI ATTAAT 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 4 cut(s) 102, 126, 153, 171
Zsp2I ATGCAT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.