Rmu_sc0001499.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001499.1
N/A
Physical Location & Seq
Forward (+)
52518 .. 52871
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgcttgactcaacaggctcggattaccacaattgtgtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccggatcgtgtgtttgtgcgaacacctacaaagcatgctcaagtagttatcttgatgcgacgccgtgtggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaaagtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgatttcaagtctgttgctgaatataattcagaagctctttgcctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.5

Weight (kDa)

6.82

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 160
AfeI AGCGCT 2 cut(s) 228, 239
AgsI TTSAA 4 cut(s) 66, 277, 284, 313
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AleI CACNNNNGTG 1 cut(s) 33
AluBI AGCT 2 cut(s) 217, 341
AluI AGCT 2 cut(s) 217, 341
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 2 cut(s) 228, 239
AspLEI GCGC 3 cut(s) 229, 240, 300
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 350
BfoI RGCGCY 2 cut(s) 230, 241
Bme1390I CCNGG 2 cut(s) 89, 101
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 2 cut(s) 144, 196
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
Bsp143I GATC 2 cut(s) 103, 198
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 91
BssMI GATC 2 cut(s) 103, 198
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 2 cut(s) 230, 241
BstHHI GCGC 3 cut(s) 229, 240, 300
BstKTI GATC 2 cut(s) 106, 201
BstMBI GATC 2 cut(s) 103, 198
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 87, 99
BstSFI CTRYAG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 3 cut(s) 229, 240, 300
CseI GACGC 1 cut(s) 168
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 18, 217, 341
CviKI_1 RGCY 3 cut(s) 18, 217, 341
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 105, 200
DpnII GATC 2 cut(s) 103, 198
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47III AGCGCT 2 cut(s) 228, 239
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 137
FaiI YATR 7 cut(s) 83, 135, 192, 194, 220, 330, 352
FatI CATG 1 cut(s) 133
FokI GGATG 1 cut(s) 218
FspBI CTAG 1 cut(s) 230
GlaI GCGC 3 cut(s) 228, 239, 299
HaeII RGCGCY 2 cut(s) 230, 241
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 3 cut(s) 229, 240, 300
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 3 cut(s) 227, 238, 298
HinP1I GCGC 3 cut(s) 227, 238, 298
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 22, 182, 337
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 3 cut(s) 227, 238, 298
Kzo9I GATC 2 cut(s) 103, 198
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 74, 101, 114, 282
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 105, 200
MboI GATC 2 cut(s) 103, 198
MboII GAAGA 1 cut(s) 245
MfeI CAATTG 1 cut(s) 31
MluCI AATT 2 cut(s) 31, 331
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 68, 272, 275
MslI CAYNNNNRTG 1 cut(s) 33
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 103, 198
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 33
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 103, 198
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SetI ASST 6 cut(s) 60, 97, 127, 219, 282, 343
SfaNI GCATC 2 cut(s) 144, 196
SfcI CTRYAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 2 cut(s) 31, 331
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 31, 331
TfiI GAWTC 1 cut(s) 257
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.