Rmu_sc0001507.1_g000001

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001507.1
OG0030192
Physical Location & Seq
Reverse (-)
2 .. 658
657 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 596 bp
atgggtccaggctcccctatcgacttggaccaaggatgggacgacatagagtgggctatcgtcaagctaacccgaatcctcgagggattgccggagacgccgttcgacgccgaataccacatctatgtctactccaccgtctacaacatgtgcgacgatcactcccagcaggtctacgaggcttgtcgcgagaccatcggggcctacaacactgagattgtgttgcctggtttggcagacaagcacggcgcgcttttgctccgggagttggtcagaagtattatgttgagaaagcaaaggaaggttcctgggattaagcaggctgggatgatcgggtttcgcgacgaggtttatgagaagagggaaggggggctgattgacagaggactgttgaaagatgtggtggagatttttgttaaaatggggatttacgaagcggattgtgaagaggaggtgatgagggatggttgtgagtactattctcggagggcgtcgagttggattgtggaggattcagggctggaatatatgtttaaggcagaggaatgcttgaggagggagaaggagagagttttgcattacctgcattcgagcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009941 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019005 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 ko05168 ko05200 map00190 map01100 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map04714 map04723 map04932 map05010 map05012 map05016 map05168 map05200
Pfam Domains
Protein Families
Cullin Cullin_Nedd8

Protein Analysis

198

Amino Acids

22.91

Weight (kDa)

4.93

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 114 - 198 2.2e-14 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030192)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0039571
rosa_multiflora Rmu_sc0001507.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 80
Acc36I ACCTGC 2 cut(s) 160, 591
AccI GTMKAC 3 cut(s) 129, 141, 174
AccII CGCG 3 cut(s) 189, 251, 342
AciI CCGC 1 cut(s) 437
AcyI GRCGYC 3 cut(s) 98, 108, 491
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 37, 268
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 3 cut(s) 7, 226, 307
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 89, 185
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 201
AspLEI GCGC 2 cut(s) 251, 253
AspS9I GGNCC 3 cut(s) 5, 28, 201
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 5, 28
BccI CCATC 3 cut(s) 30, 203, 458
BceAI ACGGC 2 cut(s) 85, 262
BciT130I CCWGG 3 cut(s) 9, 228, 309
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 89, 185
BfuAI ACCTGC 2 cut(s) 160, 591
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 4 cut(s) 9, 228, 263, 309
Bme18I GGWCC 2 cut(s) 5, 28
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 5, 28, 201
BmiI GGNNCC 4 cut(s) 6, 13, 202, 306
BmrFI CCNGG 4 cut(s) 9, 228, 263, 309
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 1 cut(s) 263
BsaHI GRCGYC 3 cut(s) 98, 108, 491
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 31, 308
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 268
BseBI CCWGG 3 cut(s) 9, 228, 309
BseDI CCNNGG 2 cut(s) 31, 308
BseGI GGATG 3 cut(s) 41, 333, 469
BseLI CCNNNNNNNGG 2 cut(s) 37, 268
BseMII CTCAG 1 cut(s) 204
BsePI GCGCGC 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 464, 568
BseYI CCCAGC 2 cut(s) 165, 323
Bsh1236I CGCG 3 cut(s) 189, 251, 342
BshFI GGCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 92, 262
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 37, 268
BsmAI GTCTC 2 cut(s) 89, 185
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 551, 586
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 2 cut(s) 157, 330
Bsp68I TCGCGA 2 cut(s) 189, 342
BspACI CCGC 1 cut(s) 437
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 3 cut(s) 189, 251, 342
BspLI GGNNCC 4 cut(s) 6, 13, 202, 306
BspMI ACCTGC 2 cut(s) 160, 591
BspTNI GGTCTC 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 31, 308
BssHII GCGCGC 1 cut(s) 249
BssMI GATC 2 cut(s) 157, 330
BssNI GRCGYC 3 cut(s) 98, 108, 491
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 3 cut(s) 9, 228, 309
Bst4CI ACNGT 2 cut(s) 139, 390
Bst6I CTCTTC 2 cut(s) 353, 441
BstACI GRCGYC 3 cut(s) 98, 108, 491
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 251, 321
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 41, 333, 469
BstFNI CGCG 3 cut(s) 189, 251, 342
BstHHI GCGC 2 cut(s) 251, 253
BstKTI GATC 2 cut(s) 160, 333
BstMAI GTCTC 2 cut(s) 89, 185
BstMBI GATC 2 cut(s) 157, 330
BstMWI GCNNNNNNNGC 3 cut(s) 97, 250, 583
BstNI CCWGG 3 cut(s) 9, 228, 309
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 4 cut(s) 7, 226, 261, 307
BstUI CGCG 3 cut(s) 189, 251, 342
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 3 cut(s) 41, 333, 469
BtsIMutI CAGTG 1 cut(s) 210
BtuMI TCGCGA 2 cut(s) 189, 342
BveI ACCTGC 2 cut(s) 160, 591
Cac8I GCNNGC 2 cut(s) 251, 321
CfoI GCGC 2 cut(s) 251, 253
Cfr13I GGNCC 3 cut(s) 5, 28, 201
CseI GACGC 3 cut(s) 106, 116, 480
Csp6I GTAC 1 cut(s) 475
CviAII CATG 1 cut(s) 148
CviJI RGCY 8 cut(s) 12, 56, 67, 182, 203, 323, 373, 520
CviKI_1 RGCY 8 cut(s) 12, 56, 67, 182, 203, 323, 373, 520
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 213
DpnI GATC 2 cut(s) 159, 332
DpnII GATC 2 cut(s) 157, 330
Eam1104I CTCTTC 2 cut(s) 353, 441
EarI CTCTTC 2 cut(s) 353, 441
Eco130I CCWWGG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 5, 28
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 7, 226, 307
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 47, 126, 149, 284, 354, 528, 530
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 147
FblI GTMKAC 3 cut(s) 129, 141, 174
FokI GGATG 3 cut(s) 48, 340, 476
GlaI GCGC 2 cut(s) 250, 252
GsaI CCCAGC 2 cut(s) 169, 327
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 92, 262
HgaI GACGC 3 cut(s) 106, 116, 480
HhaI GCGC 2 cut(s) 251, 253
Hin1I GRCGYC 3 cut(s) 98, 108, 491
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 249, 251
HinP1I GCGC 2 cut(s) 249, 251
HinfI GANTC 2 cut(s) 75, 512
HpaII CCGG 2 cut(s) 92, 262
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 3 cut(s) 130, 142, 175
Hpy188I TCNGA 2 cut(s) 275, 486
Hpy188III TCNNGA 2 cut(s) 188, 341
Hpy8I GTNNAC 3 cut(s) 130, 142, 175
Hpy99I CGWCG 4 cut(s) 110, 158, 347, 496
HpyAV CCTTC 3 cut(s) 295, 359, 556
HpyCH4III ACNGT 2 cut(s) 139, 390
HpyCH4V TGCA 2 cut(s) 577, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 250, 583
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 3 cut(s) 98, 108, 491
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 249, 251
Kzo9I GATC 2 cut(s) 157, 330
LmnI GCTCC 2 cut(s) 17, 264
MalI GATC 2 cut(s) 159, 332
MboI GATC 2 cut(s) 157, 330
MboII GAAGA 2 cut(s) 370, 458
MmeI TCCRAC 1 cut(s) 479
MseI TTAA 3 cut(s) 315, 417, 534
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 92, 262
MspR9I CCNGG 4 cut(s) 9, 228, 263, 309
Mva1269I GAATGC 2 cut(s) 551, 586
MvaI CCWGG 3 cut(s) 9, 228, 309
MvnI CGCG 3 cut(s) 189, 251, 342
MwoI GCNNNNNNNGC 3 cut(s) 97, 250, 583
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 157, 330
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 6, 13, 202, 306
NruI TCGCGA 2 cut(s) 189, 342
NspI RCATGY 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 80
PauI GCGCGC 1 cut(s) 249
PciI ACATGT 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 2 cut(s) 551, 586
PfeI GAWTC 2 cut(s) 75, 512
PfoI TCCNGGA 1 cut(s) 261
PscI ACATGT 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 7, 226, 307
PspFI CCCAGC 2 cut(s) 165, 323
PspGI CCWGG 3 cut(s) 7, 226, 307
PspN4I GGNNCC 4 cut(s) 6, 13, 202, 306
PspPI GGNCC 3 cut(s) 5, 28, 201
PspXI VCTCGAGB 1 cut(s) 80
PteI GCGCGC 1 cut(s) 249
RruI TCGCGA 2 cut(s) 189, 342
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 3 cut(s) 315, 417, 534
Sau3AI GATC 2 cut(s) 157, 330
Sau96I GGNCC 3 cut(s) 5, 28, 201
ScaI AGTACT 1 cut(s) 476
ScrFI CCNGG 4 cut(s) 9, 228, 263, 309
SetI ASST 6 cut(s) 69, 174, 306, 351, 456, 585
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 2 cut(s) 5, 28
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 80, 550
SmoI CTYRAG 2 cut(s) 80, 550
SsiI CCGC 1 cut(s) 437
StyD4I CCNGG 4 cut(s) 7, 226, 261, 307
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 139, 390
TaqI TCGA 5 cut(s) 21, 81, 105, 494, 590
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 75, 512
Tru1I TTAA 3 cut(s) 315, 417, 534
Tru9I TTAA 3 cut(s) 315, 417, 534
TscAI CASTG 1 cut(s) 217
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 5, 28
XceI RCATGY 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 80
XmiI GTMKAC 3 cut(s) 129, 141, 174
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.