Rmu_sc0001516.1_g000050

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
N/A
Physical Location & Seq
Forward (+)
190453 .. 191158
706 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
atgtatcagcaatacattgcaaaccaaactgatgttgatatggatggaaattgtggatatagagtcgttgctatctcaacggggtttggtcatgatggttggcgtacgggtggcgagtttgcaattggatatgttggccgtcattttgttaaggtaaatttgatatctcaatctgttccaattcctccagttactcttctatggcataggtaccaagttaataatggacaattgtacaacatttatgagcaacgcatagatcaattcaagaaactcgaaaatatggaagacgttggcaccacagatacatttgtagacattgtgcatcttgatatcgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.96

Weight (kDa)

4.95

Isoelectric Point (pI)

17.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 2 cut(s) 210, 296
AccI GTMKAC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 3 cut(s) 106, 212, 236
AgsI TTSAA 1 cut(s) 268
AoxI GGCC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 157
Asp718I GGTACC 1 cut(s) 210
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanI GGYRCC 2 cut(s) 210, 296
BbsI GAAGAC 1 cut(s) 294
BccI CCATC 2 cut(s) 38, 89
BceAI ACGGC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 212, 298
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 336
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 2 cut(s) 210, 296
BshVI ATCGAT 1 cut(s) 336
BsiWI CGTACG 1 cut(s) 104
BsnI GGCC 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 1 cut(s) 138
BspDI ATCGAT 1 cut(s) 336
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 212, 298
BspT107I GGYRCC 2 cut(s) 210, 296
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 234
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 49
CciI TCATGA 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 3 cut(s) 105, 211, 235
CviAII CATG 1 cut(s) 92
CviJI RGCY 1 cut(s) 138
CviKI_1 RGCY 1 cut(s) 138
CviQI GTAC 3 cut(s) 105, 211, 235
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco32I GATATC 2 cut(s) 165, 334
EcoRV GATATC 2 cut(s) 165, 334
FaeI CATG 1 cut(s) 95
FaiI YATR 9 cut(s) 41, 60, 93, 132, 202, 207, 246, 257, 284
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 315
FokI GGATG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 1 cut(s) 95
HinfI GANTC 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 92, 268, 329
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 20, 122, 325
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 95
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 1 cut(s) 201
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 2 cut(s) 188, 299
MfeI CAATTG 2 cut(s) 123, 230
MluCI AATT 6 cut(s) 49, 123, 157, 180, 230, 263
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 195
MseI TTAA 2 cut(s) 150, 219
MunI CAATTG 2 cut(s) 123, 230
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 212, 298
PagI TCATGA 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 104
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspLI CGTACG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 212, 298
RsaI GTAC 3 cut(s) 106, 212, 236
RsaNI GTAC 3 cut(s) 105, 211, 235
SaqAI TTAA 2 cut(s) 150, 219
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 1 cut(s) 72
SetI ASST 3 cut(s) 156, 212, 294
SfaNI GCATC 1 cut(s) 334
SgeI CNNG 8 cut(s) 93, 104, 120, 127, 200, 227, 280, 287
Sse9I AATT 6 cut(s) 49, 123, 157, 180, 230, 263
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 276, 336
TasI AATT 6 cut(s) 49, 123, 157, 180, 230, 263
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 2 cut(s) 150, 219
Tru9I TTAA 2 cut(s) 150, 219
XapI RAATTY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.