Rmu_sc0001516.1_g000099

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
N/A
Physical Location & Seq
Reverse (-)
398868 .. 399841
974 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
atggaggtcagaggcggcccgggtgaaccacagtggcgtatgacgagtttctatggttatgcacgaactgctgaacgtgatagatcttggcaattactaaaggatttgggcgatgctgattcattaccatggcttgtcattggggatttcaatgaaatcctcaacaatggggagaagtttgatgatcctccgagggcagagtggcaaagggatgctctagggcactgcgacttgctagacttagaggcaaaagtgacctggttgaaggaaggggaccggaatactggattcttccatcgcaaggctgcgaatcggaagaggaaaaatgctatacatggcctgtatgatgaagatgggttatgggttgaggatgatgacggtgtagagaggattatcacctcctattttcaggatatgttcactgcatctccggttgatatggatgctatgaaccaaaccctagaggctatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

157

Amino Acids

18.11

Weight (kDa)

4.61

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 151, 265
AjnI CCWGG 1 cut(s) 257
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 2 cut(s) 16, 337
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 17, 274
AsuC2I CCSGG 2 cut(s) 20, 21
AsuHPI GGTGA 2 cut(s) 35, 388
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 303, 347
BciT130I CCWGG 1 cut(s) 259
BcnI CCSGG 2 cut(s) 20, 21
BfaI CTAG 3 cut(s) 218, 236, 461
BglII AGATCT 1 cut(s) 83
BisI GCNGC 2 cut(s) 16, 306
BlsI GCNGC 2 cut(s) 17, 307
Bme1390I CCNGG 3 cut(s) 20, 21, 259
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 17, 274
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 20, 21, 259
BmsI GCATC 4 cut(s) 103, 202, 433, 434
BpuMI CCSGG 2 cut(s) 20, 21
BsaJI CCNNGG 3 cut(s) 19, 128, 191
BsaWI WCCGGW 2 cut(s) 276, 430
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 3 cut(s) 19, 128, 191
BseGI GGATG 3 cut(s) 217, 376, 448
BseLI CCNNNNNNNGG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 18, 339
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 3 cut(s) 20, 277, 431
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 18, 339
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 83, 184
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 18, 339
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 3 cut(s) 19, 128, 191
BssMI GATC 2 cut(s) 83, 184
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 33, 380
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 241
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 3 cut(s) 217, 376, 448
BstKTI GATC 2 cut(s) 86, 187
BstMBI GATC 2 cut(s) 83, 184
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 18, 19, 257
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 18, 339
BtgI CCRYGG 1 cut(s) 128
BtgZI GCGATG 2 cut(s) 126, 281
BtsCI GGATG 3 cut(s) 217, 376, 448
BtsI GCAGTG 2 cut(s) 223, 420
BtsIMutI CAGTG 3 cut(s) 38, 223, 420
Cfr13I GGNCC 2 cut(s) 17, 274
Cfr9I CCCGGG 1 cut(s) 19
CsiI ACCWGGT 1 cut(s) 257
CviAII CATG 2 cut(s) 129, 335
CviJI RGCY 5 cut(s) 18, 133, 305, 339, 467
CviKI_1 RGCY 5 cut(s) 18, 133, 305, 339, 467
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 85, 186
DpnII GATC 2 cut(s) 83, 184
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 132, 338
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 128, 334
Fnu4HI GCNGC 2 cut(s) 16, 306
FokI GGATG 3 cut(s) 224, 383, 455
Fsp4HI GCNGC 2 cut(s) 16, 306
FspBI CTAG 3 cut(s) 218, 236, 461
GluI GCNGC 2 cut(s) 16, 306
HaeIII GGCC 2 cut(s) 18, 339
HapII CCGG 3 cut(s) 20, 277, 431
Hin1II CATG 2 cut(s) 132, 338
HinfI GANTC 3 cut(s) 119, 288, 310
HpaII CCGG 3 cut(s) 20, 277, 431
HphI GGTGA 2 cut(s) 35, 388
Hpy166II GTNNAC 2 cut(s) 26, 420
Hpy188I TCNGA 3 cut(s) 11, 192, 315
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 2 cut(s) 26, 420
HpyAV CCTTC 2 cut(s) 259, 263
HpyCH4III ACNGT 2 cut(s) 33, 380
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 62, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 2 cut(s) 132, 338
Kzo9I GATC 2 cut(s) 83, 184
LpnPI CCDG 8 cut(s) 33, 244, 270, 271, 290, 353, 395, 444
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 4 cut(s) 103, 202, 433, 434
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 3 cut(s) 218, 236, 461
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 85, 186
MboI GATC 2 cut(s) 83, 184
MboII GAAGA 3 cut(s) 283, 328, 362
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 3 cut(s) 20, 277, 431
MspR9I CCNGG 3 cut(s) 20, 21, 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 2 cut(s) 20, 21
NcoI CCATGG 1 cut(s) 128
NdeII GATC 2 cut(s) 83, 184
NlaIII CATG 2 cut(s) 132, 338
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 119, 288, 310
PkrI GCNGC 2 cut(s) 17, 307
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 2 cut(s) 17, 274
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 127
SatI GCNGC 2 cut(s) 16, 306
Sau3AI GATC 2 cut(s) 83, 184
Sau96I GGNCC 2 cut(s) 17, 274
ScrFI CCNGG 3 cut(s) 20, 21, 259
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 9, 79, 260, 401
SexAI ACCWGGT 1 cut(s) 257
SfaNI GCATC 4 cut(s) 103, 202, 433, 434
SinI GGWCC 1 cut(s) 274
SmaI CCCGGG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 15
SspMI CTAG 3 cut(s) 218, 236, 461
StyD4I CCNGG 3 cut(s) 18, 19, 257
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 33, 380
TaiI ACGT 1 cut(s) 79
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 119, 288, 310
TscAI CASTG 3 cut(s) 38, 230, 427
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 111, 168, 363, 464
TspMI CCCGGG 1 cut(s) 19
TspRI CASTG 3 cut(s) 38, 230, 427
VpaK11BI GGWCC 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 19
XspI CTAG 3 cut(s) 218, 236, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.