Rmu_sc0001517.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001517.1
N/A
Physical Location & Seq
Forward (+)
11069 .. 11395
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgactcatcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccagaaggctgtggatctcactcgaagatagatttggcaacatctgtgactccctgcttcctgacctagaagtgagatgccatagcctccgcttctatgatttcaagtcagttcttgactacaactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacaaatgcgatgttgattgagaagactctctctaatttccccgtctctgcattgatggttgctaagaactatcgaatcgatgttactgcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.7

Weight (kDa)

5.11

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 57, 260
BccI CCATC 1 cut(s) 280
BcgI CGANNNNNNTGC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 122
BmsI GCATC 1 cut(s) 122
BpiI GAAGAC 2 cut(s) 57, 260
BpmI CTGGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 69, 228
BspACI CCGC 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 309
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 28
BssMI GATC 2 cut(s) 69, 228
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 72, 231
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 69, 228
BstV2I GAAGAC 2 cut(s) 57, 260
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 2 cut(s) 64, 141
CviKI_1 RGCY 2 cut(s) 64, 141
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 71, 230
DpnII GATC 2 cut(s) 69, 228
EcoRI GAATTC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 280
FaiI YATR 5 cut(s) 12, 14, 41, 138, 153
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 11
HinfI GANTC 5 cut(s) 4, 20, 104, 256, 306
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 116, 170
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 281, 320
HpyF3I CTNAG 1 cut(s) 294
Kzo9I GATC 2 cut(s) 69, 228
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 41, 70, 122, 129
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 101, 313
MalI GATC 2 cut(s) 71, 230
MboI GATC 2 cut(s) 69, 228
MboII GAAGA 4 cut(s) 59, 62, 92, 265
MflI RGATCY 1 cut(s) 69
MluCI AATT 2 cut(s) 212, 265
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 69, 228
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 20, 306
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 2 cut(s) 69, 228
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 1 cut(s) 123
SfaNI GCATC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 212, 265
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 122
TaqI TCGA 3 cut(s) 78, 304, 309
TasI AATT 2 cut(s) 212, 265
TfiI GAWTC 2 cut(s) 20, 306
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 56, 60
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.