Rmu_sc0001518.1_g000006

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001518.1
N/A
Physical Location & Seq
Forward (+)
13077 .. 13907
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001518.1_g000006.1.cds

Sequence Viewer

Length: 666 bp
atggtggggtgtgatccaggtccatggcgtagtacctgggagtaccgatggggctcaggggctagtgctaaacctagccctatatgtgactcccttgcaaagcttcaatctctgtatgagattgacttgggaaataactcattctatgctccagttccaagatcctttgccaatttttcaaacttgacttccttgagtctctttggttgtaacttgctaggaatatttcccaaagtggtttttcttattccttccctacaaaccattgatatttctagtaatccggaacttggtggttcctttccagagtttccaaagaataggacaaaactttcaaccatctctctttcacattgcaatttcactggatccctccccatgtcaattgagaaccttacccaattggttgacctggacgtgtcatggaacaggttcaatagtcctatcagtcctattcactgggaagcccttgttaatctgagaagcctcgacttccacaacaatctactctatgggagtattccatcatctattgtttctccttccttgctggttgcattagcactttctaataatcatttctctggtcaagtccctgaatttttcaatacctcttcacagttacttcggaaccttcgtttgggaaacaacaatttggaaggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

221

Amino Acids

24.32

Weight (kDa)

6.05

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 283
AclWI GGATC 4 cut(s) 8, 156, 363, 376
AcsI RAATTY 1 cut(s) 599
AfaI GTAC 2 cut(s) 34, 44
AfiI CCNNNNNNNGG 2 cut(s) 290, 640
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 5 cut(s) 107, 180, 336, 436, 607
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 3 cut(s) 16, 35, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 4 cut(s) 8, 156, 363, 376
Aor13HI TCCGGA 1 cut(s) 283
ApoI RAATTY 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 56
BccI CCATC 3 cut(s) 42, 347, 532
BciT130I CCWGG 3 cut(s) 18, 37, 413
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 4 cut(s) 63, 75, 218, 276
Bme1390I CCNGG 3 cut(s) 18, 37, 413
Bme18I GGWCC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 298, 370, 632
BmrFI CCNGG 3 cut(s) 18, 37, 413
BmrI ACTGGG 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 23, 36
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 640
Bse1I ACTGG 3 cut(s) 152, 370, 464
Bse3DI GCAATG 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 3 cut(s) 18, 37, 413
BseDI CCNNGG 2 cut(s) 23, 36
BseLI CCNNNNNNNGG 2 cut(s) 290, 640
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 69, 470
BseNI ACTGG 3 cut(s) 152, 370, 464
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 2 cut(s) 290, 640
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 13, 161, 368
Bsp19I CCATGG 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 68, 471
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 298, 370, 632
BspPI GGATC 4 cut(s) 8, 156, 363, 376
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 3 cut(s) 152, 370, 464
BssECI CCNNGG 2 cut(s) 23, 36
BssMI GATC 3 cut(s) 13, 161, 368
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 18, 37, 413
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 55, 479
BstDSI CCRYGG 1 cut(s) 23
BstKTI GATC 3 cut(s) 16, 164, 371
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 3 cut(s) 13, 161, 368
BstNI CCWGG 3 cut(s) 18, 37, 413
BstSCI CCNGG 3 cut(s) 16, 35, 411
BstX2I RGATCY 2 cut(s) 161, 368
BstXI CCANNNNNNTGG 1 cut(s) 24
BstYI RGATCY 2 cut(s) 161, 368
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 363, 457
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 33, 43
CviAII CATG 3 cut(s) 24, 379, 423
CviJI RGCY 6 cut(s) 54, 62, 78, 103, 467, 486
CviKI_1 RGCY 6 cut(s) 54, 62, 78, 103, 467, 486
CviQI GTAC 2 cut(s) 33, 43
DdeI CTNAG 2 cut(s) 55, 479
DpnI GATC 3 cut(s) 15, 163, 370
DpnII GATC 3 cut(s) 13, 161, 368
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 16, 35, 411
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 27, 382, 426
FaiI YATR 8 cut(s) 25, 83, 85, 117, 147, 380, 424, 513
FaqI GGGAC 1 cut(s) 578
FatI CATG 3 cut(s) 23, 378, 422
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 4 cut(s) 63, 75, 218, 276
GsuI CTGGAG 1 cut(s) 135
HapII CCGG 1 cut(s) 284
Hin1II CATG 3 cut(s) 27, 382, 426
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 89, 196
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 480, 630
Hpy188III TCNNGA 2 cut(s) 284, 305
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 261, 552, 644, 653
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 3 cut(s) 98, 357, 557
HpyF3I CTNAG 2 cut(s) 55, 479
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 3 cut(s) 27, 382, 426
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 13, 161, 368
LmnI GCTCC 1 cut(s) 154
MaeI CTAG 4 cut(s) 63, 75, 218, 276
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 86, 209, 621
MalI GATC 3 cut(s) 15, 163, 370
MboI GATC 3 cut(s) 13, 161, 368
MboII GAAGA 1 cut(s) 606
MfeI CAATTG 2 cut(s) 384, 401
MflI RGATCY 2 cut(s) 161, 368
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 6 cut(s) 172, 358, 384, 401, 599, 652
MlyI GAGTC 2 cut(s) 83, 205
MnlI CCTC 3 cut(s) 383, 497, 622
MroI TCCGGA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 1 cut(s) 474
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 3 cut(s) 18, 37, 413
MunI CAATTG 2 cut(s) 384, 401
MvaI CCWGG 3 cut(s) 18, 37, 413
NcoI CCATGG 1 cut(s) 23
NdeII GATC 3 cut(s) 13, 161, 368
NlaIII CATG 3 cut(s) 27, 382, 426
NlaIV GGNNCC 3 cut(s) 298, 370, 632
NmuCI GTSAC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 431
PleI GAGTC 2 cut(s) 83, 204
PpsI GAGTC 2 cut(s) 83, 204
Psp6I CCWGG 3 cut(s) 16, 35, 411
PspGI CCWGG 3 cut(s) 16, 35, 411
PspN4I GGNNCC 3 cut(s) 298, 370, 632
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 161, 368
RsaI GTAC 2 cut(s) 34, 44
RsaNI GTAC 2 cut(s) 33, 43
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 3 cut(s) 13, 161, 368
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 83, 205
ScrFI CCNGG 3 cut(s) 18, 37, 413
SduI GDGCHC 1 cut(s) 56
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 6 cut(s) 172, 358, 384, 401, 599, 652
SspI AATATT 1 cut(s) 225
SspMI CTAG 4 cut(s) 63, 75, 218, 276
StyD4I CCNGG 3 cut(s) 16, 35, 411
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 489
TasI AATT 6 cut(s) 172, 358, 384, 401, 599, 652
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 2 cut(s) 370, 464
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspRI CASTG 2 cut(s) 370, 464
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 4 cut(s) 63, 75, 218, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.