Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001526.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

59956 .. 63831

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgggtattgagaaatggaacgagttcgagaacgagtacgcgttcgtgtatttgaacccggaaaagggttcgaagaaggttctggtgaagtgtcttgtgattgatggaacattgagtgtagatgctttggctgatagggcttctcagaacatgcagacatctttccagtgcctattgaacaagcaaggaggaaaactagatgctcagaacgttcacttgttggtgattatgtgcaagaaaatgagggcagtaattactcatcatagtttaagaacttggacacccagaatgttcactgtgaatttaagtagtgttggtgattatgtgcaagaaaatgagggcagtaattactcatcacagtttaagaacttggacaccctagtgaagaatctcaacgctcaagttttgttgaaattggaggagtcttccacacccaaggcaacaagtcaaaaagacaatgccgtcgtagctctttctttcaccactttgttgagccattacaggattgcaatctcagacgaattctctccctccaaaatggaaagaagagcaacttctccgatgactgctattcttgtttacattgcagttttcgtggttgttgcttattgttcttcatctgtaacagctgaaagaagctcccaatctttgactagttctcaccctccacaatttcgacataatgtggttcgaggaccatttcaaaacctctacagatgggcagatctggtacctatcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009733 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010605 GO:0012505 GO:0016020 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032870 GO:0042176 GO:0042177 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051716 GO:0060255 GO:0061136 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901799 GO:1903050 GO:1903051 GO:1903362 GO:1903363

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

PI31_Prot_C PI31_Prot_N

Protein Analysis

247

Amino Acids

27.71

Weight (kDa)

8.99

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc65I	GGTACC	1 cut(s)	730
AccB1I	GGYRCC	1 cut(s)	730
AccII	CGCG	1 cut(s)	41
AclI	AACGTT	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	301, 521
AfaI	GTAC	2 cut(s)	38, 732
AfiI	CCNNNNNNNGG	2 cut(s)	64, 65
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	55, 178, 412, 704
AhlI	ACTAGT	1 cut(s)	653
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	470, 629, 639
AluI	AGCT	3 cut(s)	470, 629, 639
ApoI	RAATTY	2 cut(s)	301, 521
Asp700I	GAANNNNTTC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	5 cut(s)	97, 235, 329, 472, 653
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	417
BccI	CCATC	2 cut(s)	98, 711
BceAI	ACGGC	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	3 cut(s)	197, 380, 654
BfmI	CTRYAG	1 cut(s)	712
BglII	AGATCT	1 cut(s)	724
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	112, 190
BpiI	GAAGAC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 65
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	435
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	64, 65
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	158, 218, 528
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	64, 65
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	724
BspCNI	CTCAG	3 cut(s)	157, 217, 527
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	732
BspQI	GCTCTTC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	298, 360
Bst6I	CTCTTC	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	144, 204, 514
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 467
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	712
BstUI	CGCG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	173, 294
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	37, 731
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	131, 140, 470, 495, 629, 639
CviKI_1	RGCY	6 cut(s)	131, 140, 470, 495, 629, 639
CviQI	GTAC	2 cut(s)	37, 731
DdeI	CTNAG	3 cut(s)	144, 204, 514
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	152, 230, 264, 324, 681
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FatI	CATG	1 cut(s)	150
FspBI	CTAG	3 cut(s)	197, 380, 654
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	388, 422
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	5 cut(s)	97, 235, 329, 472, 653
Hpy166II	GTNNAC	3 cut(s)	214, 294, 580
Hpy188I	TCNGA	4 cut(s)	147, 207, 517, 561
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	3 cut(s)	214, 294, 580
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	298, 360
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	154, 234, 328, 509, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 467
HpyF3I	CTNAG	3 cut(s)	144, 204, 514
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	734
Kzo9I	GATC	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	644
LpnPI	CCDG	6 cut(s)	68, 72, 179, 298, 487, 713
LweI	GCATC	2 cut(s)	112, 190
MaeI	CTAG	3 cut(s)	197, 380, 654
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	5 cut(s)	85, 397, 417, 558, 606
MflI	RGATCY	1 cut(s)	724
MluCI	AATT	6 cut(s)	252, 301, 346, 413, 521, 671
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	8 cut(s)	182, 237, 331, 412, 541, 675, 686, 719
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	269, 305, 363
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	137, 467
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	732
NspI	RCATGY	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	38, 732
RsaNI	GTAC	2 cut(s)	37, 731
RseI	CAYNNNNRTG	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	3 cut(s)	269, 305, 363
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	7 cut(s)	81, 213, 472, 631, 641, 711, 736
SfaNI	GCATC	2 cut(s)	112, 190
SfcI	CTRYAG	1 cut(s)	712
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	6 cut(s)	252, 301, 346, 413, 521, 671
SspMI	CTAG	3 cut(s)	197, 380, 654
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	298, 360
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	4 cut(s)	27, 71, 676, 691
TasI	AATT	6 cut(s)	252, 301, 346, 413, 521, 671
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	3 cut(s)	269, 305, 363
Tru9I	TTAA	3 cut(s)	269, 305, 363
TscAI	CASTG	2 cut(s)	173, 301
TspDTI	ATGAA	1 cut(s)	606
TspRI	CASTG	2 cut(s)	173, 301
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	2 cut(s)	301, 521
XceI	RCATGY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	3 cut(s)	197, 380, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.