Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0031137

Physical Location & Seq

Genomic Coordinates Reverse (-)

135142 .. 135519

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgaggaagctagatctcactagtgaaactgaggttgagatcaaatgcatgggacaaccagtgaccccaacattggagatgtataatttggttgacttgtggctacaaaccgcatcacctacacaaagaattccagcatccattggttcctctgcaaaggattttgtgatggtgctcgggtattctcgaaagatttcaaactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

68

Amino Acids

7.58

Weight (kDa)

6.11

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031137)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001527.1_g000029 Rmu_sc0005115.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	198
AhlI	ACTAGT	1 cut(s)	20
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	11, 21
BglII	AGATCT	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	2 cut(s)	122, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	13, 39
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	13, 39
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	16, 42
BstMBI	GATC	2 cut(s)	13, 39
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	66
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	2 cut(s)	10, 103
CviKI_1	RGCY	2 cut(s)	10, 103
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	15, 41
DpnII	GATC	2 cut(s)	13, 39
Eco88I	CYCGRG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	50
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 84
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	48
FokI	GGATG	1 cut(s)	124
FspBI	CTAG	2 cut(s)	11, 21
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	48, 155
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	13, 39
LpnPI	CCDG	2 cut(s)	72, 147
LweI	GCATC	2 cut(s)	122, 146
MaeI	CTAG	2 cut(s)	11, 21
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	15, 41
MboI	GATC	2 cut(s)	13, 39
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	85, 129
MnlI	CCTC	2 cut(s)	25, 160
Mph1103I	ATGCAT	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	193
NdeII	GATC	2 cut(s)	13, 39
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	13, 39
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	3 cut(s)	12, 36, 121
SfaNI	GCATC	2 cut(s)	122, 146
SgeI	CNNG	9 cut(s)	23, 33, 61, 71, 109, 146, 188, 190, 198
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	2 cut(s)	85, 129
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	11, 21
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	85, 129
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	2 cut(s)	11, 21
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.