Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

311407 .. 317282

Gene Structure 5876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggccaacaacccctccgaagctcaggccgacgatttcctcgagcaaattctcggcctccccaatttcgcctccgccgatgctaatttgaccggaggcgacggaggcctcgccggagctccctcctcgatgatgctccagctcagttccggtgacggctccggccacatgggcggaggtggctaccacggaggagtgttcccgttagggttgagcctggagcaggggaaggccgggtttctgaagcccgaggaggcctctgggagtgggaagcggtttcgagacgacgtcgttgatagtagagcttcggctgtgaaaaatgttttccatgggcaaccaatttccagtacagttgctgcagcaccacatccaccggctatgcgaccaagggtgagggccagaagaggccaagccacggatccacatagcattgctgagcggttgcgccgagaacgaatagcagaaagaattagggcgttgcaggaactagttcccagtgtgaacaaggttgctgaggccgatatggttcagaacttcagatcgggatttcgagcctctccacttcacggcaactccgcgtcaagggctcacggcatctccgcgtcacggcgtcttcgagtcatggcgtctctgcgtcacggctatggcagaggagaggagatggacgcggctgatcgaggtgtgaaggtggcggctccgttcagtcgttctagatcgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

240

Amino Acids

25.26

Weight (kDa)

10.34

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	439
AccII	CGCG	3 cut(s)	578, 602, 668
AciI	CCGC	8 cut(s)	75, 174, 274, 439, 576, 600, 668, 692
AclWI	GGATC	2 cut(s)	413, 426
AcoI	YGGCCR	2 cut(s)	3, 163
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	263, 520
AcyI	GRCGYC	3 cut(s)	288, 610, 626
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	5 cut(s)	223, 415, 566, 582, 606
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	23, 119, 142, 305
AluI	AGCT	4 cut(s)	23, 119, 142, 305
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	276, 633
AlwI	GGATC	2 cut(s)	413, 426
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	41, 248
ApeKI	GCWGC	2 cut(s)	356, 359
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	164, 403
AvaI	CYCGRG	2 cut(s)	41, 248
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	2 cut(s)	121, 589
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	343, 371
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	5 cut(s)	172, 583, 607, 623, 655
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	276, 633
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	2 cut(s)	488, 711
BfmI	CTRYAG	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	4 cut(s)	357, 360, 669, 693
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	358, 361, 670, 694
Bme1390I	CCNGG	2 cut(s)	218, 235
BmeT110I	CYCGRG	2 cut(s)	41, 248
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	3 cut(s)	160, 420, 696
BmrFI	CCNGG	2 cut(s)	218, 235
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	70, 123, 603
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	2 cut(s)	122, 239
Bpu10I	CCTNAGC	2 cut(s)	24, 513
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	3 cut(s)	288, 610, 626
BsaJI	CCNNGG	5 cut(s)	187, 249, 328, 386, 414
BsaWI	WCCGGW	2 cut(s)	92, 149
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 557, 581, 587, 611
Bsc4I	CCNNNNNNNGG	5 cut(s)	223, 415, 566, 582, 606
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	345, 495
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	5 cut(s)	187, 249, 328, 386, 414
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	5 cut(s)	223, 415, 566, 582, 606
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	38, 157, 426, 504
BseNI	ACTGG	2 cut(s)	345, 495
BseRI	GAGGAG	5 cut(s)	115, 207, 266, 666, 671
BseXI	GCAGC	2 cut(s)	343, 371
Bsh1236I	CGCG	3 cut(s)	578, 602, 668
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	2 cut(s)	41, 248
BsiSI	CCGG	6 cut(s)	93, 114, 150, 162, 234, 374
BslI	CCNNNNNNNGG	5 cut(s)	223, 415, 566, 582, 606
BsmAI	GTCTC	2 cut(s)	276, 633
BsmBI	CGTCTC	2 cut(s)	276, 633
BsoBI	CYCGRG	2 cut(s)	41, 248
Bsp1286I	GDGCHC	2 cut(s)	121, 589
Bsp143I	GATC	4 cut(s)	418, 539, 673, 713
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	8 cut(s)	75, 174, 274, 439, 576, 600, 668, 692
BspCNI	CTCAG	4 cut(s)	37, 156, 427, 505
BspFNI	CGCG	3 cut(s)	578, 602, 668
BspLI	GGNNCC	3 cut(s)	160, 420, 696
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	413, 426
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	345, 495
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	5 cut(s)	187, 249, 328, 386, 414
BssMI	GATC	4 cut(s)	418, 539, 673, 713
BssNI	GRCGYC	3 cut(s)	288, 610, 626
BssT1I	CCWWGG	2 cut(s)	328, 386
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	3 cut(s)	288, 610, 626
BstDEI	CTNAG	4 cut(s)	24, 143, 435, 513
BstDSI	CCRYGG	3 cut(s)	187, 328, 414
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	3 cut(s)	578, 602, 668
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	4 cut(s)	421, 542, 676, 716
BstMAI	GTCTC	2 cut(s)	276, 633
BstMBI	GATC	4 cut(s)	418, 539, 673, 713
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 584
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	216, 233
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	3 cut(s)	578, 602, 668
BstV1I	GCAGC	2 cut(s)	343, 371
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtgI	CCRYGG	3 cut(s)	187, 328, 414
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	6 cut(s)	567, 591, 599, 615, 623, 674
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	169, 329, 622
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	4 cut(s)	24, 143, 435, 513
DpnI	GATC	4 cut(s)	420, 541, 675, 715
DpnII	GATC	4 cut(s)	418, 539, 673, 713
EaeI	YGGCCR	2 cut(s)	3, 163
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	64, 189
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	328, 386
Eco147I	AGGCCT	2 cut(s)	108, 257
Eco24I	GRGCYC	2 cut(s)	121, 589
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	263, 520
Eco88I	CYCGRG	2 cut(s)	41, 248
EcoICRI	GAGCTC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	328, 386
EcoT38I	GRGCYC	2 cut(s)	121, 589
ErhI	CCWWGG	2 cut(s)	328, 386
Esp3I	CGTCTC	2 cut(s)	276, 633
FaeI	CATG	3 cut(s)	172, 332, 625
FaiI	YATR	7 cut(s)	170, 330, 380, 426, 524, 623, 645
FatI	CATG	3 cut(s)	168, 328, 621
Fnu4HI	GCNGC	4 cut(s)	357, 360, 669, 693
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	2 cut(s)	121, 589
Fsp4HI	GCNGC	4 cut(s)	357, 360, 669, 693
FspBI	CTAG	2 cut(s)	488, 711
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	4 cut(s)	357, 360, 669, 693
GsuI	CTGGAG	2 cut(s)	122, 239
HapII	CCGG	6 cut(s)	93, 114, 150, 162, 234, 374
HgaI	GACGC	6 cut(s)	567, 591, 599, 615, 623, 674
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	3 cut(s)	288, 610, 626
Hin1II	CATG	3 cut(s)	172, 332, 625
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HinfI	GANTC	1 cut(s)	618
HpaII	CCGG	6 cut(s)	93, 114, 150, 162, 234, 374
HphI	GGTGA	2 cut(s)	164, 403
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	4 cut(s)	19, 243, 531, 539
Hpy188III	TCNNGA	3 cut(s)	281, 543, 711
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	4 cut(s)	35, 104, 290, 293
HpyAV	CCTTC	2 cut(s)	223, 679
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	359, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 584
HpyF3I	CTNAG	4 cut(s)	24, 143, 435, 513
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	3 cut(s)	288, 610, 626
Hsp92II	CATG	3 cut(s)	172, 332, 625
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	418, 539, 673, 713
LmnI	GCTCC	6 cut(s)	116, 124, 141, 164, 220, 700
Lsp1109I	GCAGC	2 cut(s)	343, 371
LweI	GCATC	3 cut(s)	70, 123, 603
MaeI	CTAG	2 cut(s)	488, 711
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	152, 603, 635
MalI	GATC	4 cut(s)	420, 541, 675, 715
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	4 cut(s)	418, 539, 673, 713
MboII	GAAGA	2 cut(s)	414, 605
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	121, 589
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	48, 64, 85, 339, 468
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	627
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	93, 114, 150, 162, 234, 374
MspR9I	CCNGG	2 cut(s)	218, 235
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	3 cut(s)	578, 602, 668
MwoI	GCNNNNNNNGC	4 cut(s)	105, 171, 180, 584
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	418, 539, 673, 713
NlaIII	CATG	3 cut(s)	172, 332, 625
NlaIV	GGNNCC	3 cut(s)	160, 420, 696
NmeAIII	GCCGAG	2 cut(s)	33, 473
NmuCI	GTSAC	3 cut(s)	152, 603, 635
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	2 cut(s)	108, 257
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 75, 613
PdmI	GAANNNNTTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	358, 361, 670, 694
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	160, 420, 696
PspPI	GGNCC	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	4 cut(s)	357, 360, 669, 693
Sau3AI	GATC	4 cut(s)	418, 539, 673, 713
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	2 cut(s)	218, 235
SduI	GDGCHC	2 cut(s)	121, 589
SetI	ASST	9 cut(s)	25, 121, 144, 181, 291, 307, 510, 682, 690
SfaNI	GCATC	3 cut(s)	70, 123, 603
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	5 cut(s)	48, 64, 85, 339, 468
SseBI	AGGCCT	2 cut(s)	108, 257
SsiI	CCGC	8 cut(s)	75, 174, 274, 439, 576, 600, 668, 692
SspMI	CTAG	2 cut(s)	488, 711
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	2 cut(s)	108, 257
StyD4I	CCNGG	2 cut(s)	216, 233
StyI	CCWWGG	2 cut(s)	328, 386
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	6 cut(s)	42, 128, 280, 550, 616, 676
TasI	AATT	5 cut(s)	48, 64, 85, 339, 468
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	2 cut(s)	671, 695
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	3 cut(s)	152, 603, 635
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	3 cut(s)	152, 603, 635
TspGWI	ACGGA	4 cut(s)	117, 204, 431, 687
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	710
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	2 cut(s)	488, 711
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.