Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001549.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4356 .. 6560

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001549.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgtttctaaccatttccttcaggcgacctggtggagatcgtatatacaaagtttttgaccaccaattaccagctgctttaaaaaagctcccatttgatcggcatctttctgtaaagaatgtccaaaaagttgttacagaggctgatggctatcagccccatttgattgctccagaacaaggataccgcagacttattgatggagctatcgtctattttaaaggaccagctgaagcctctgtggatgctgtgcactttgttttgaaagaacttgtaccgaagtcaatagctgagacagaggaattgagacgattccctacacttcagtctgacattgcagcagcttccacagaagcattggaaagattccgtgatgaaagcaggaagacagaccaaatgcagacaaaaatagaaaagaaccgccaccaaatatggacatggttggggataattatctcaggaggatcgcatcaaacgtcaactcttatatcaatatggtttgtgagactgaggaatttgattccgaaggctgttgtccactgtcaagttcgagaggccaaaagatctctgctcaactacttttacactcaaattgggaggcaagagaaggagaggctaggtgcaatgttggatgaggatccagcactcatggaaaagcgaacgcttattgctaaacggcttgaactgtacaagtcagccagagatgagattgattctgtcgcatggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

243

Amino Acids

28.06

Weight (kDa)

9.52

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	187, 421
AclWI	GGATC	3 cut(s)	472, 632, 645
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	3 cut(s)	4, 252, 308
AfaI	GTAC	2 cut(s)	276, 689
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	265, 683
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	74, 88, 206, 230, 290, 344
AluI	AGCT	6 cut(s)	74, 88, 206, 230, 290, 344
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	3 cut(s)	287, 301, 499
Alw44I	GTGCAC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	472, 632, 645
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	555
ApaLI	GTGCAC	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	74, 338, 341
ApoI	RAATTY	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	61, 350, 353
BccI	CCATC	2 cut(s)	140, 194
BceAI	ACGGC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	287, 301, 499
BfaI	CTAG	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	3 cut(s)	75, 339, 342
BlsI	GCNGC	3 cut(s)	76, 340, 343
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	112, 235, 478
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	156
BsaBI	GATNNNNATC	4 cut(s)	102, 150, 452, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	333, 630
Bse8I	GATNNNNATC	4 cut(s)	102, 150, 452, 636
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	250, 637
BseJI	GATNNNNATC	4 cut(s)	102, 150, 452, 636
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	333, 630
BseMII	CTCAG	3 cut(s)	282, 471, 500
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	61, 350, 353
BshFI	GGCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	3 cut(s)	287, 301, 499
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	37, 97, 464, 563, 637
BspACI	CCGC	2 cut(s)	187, 421
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	3 cut(s)	283, 470, 501
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	3 cut(s)	472, 632, 645
BsrDI	GCAATG	2 cut(s)	333, 630
BsrGI	TGTACA	1 cut(s)	687
BssMI	GATC	5 cut(s)	37, 97, 464, 563, 637
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	542, 687
BstAUI	TGTACA	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	291, 457, 509
BstF5I	GGATG	2 cut(s)	250, 637
BstKTI	GATC	5 cut(s)	40, 100, 467, 566, 640
BstMAI	GTCTC	3 cut(s)	287, 301, 499
BstMBI	GATC	5 cut(s)	37, 97, 464, 563, 637
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	61, 350, 353
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	563, 637
BstYI	RGATCY	2 cut(s)	563, 637
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	250, 637
BtsIMutI	CAGTG	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	275, 688
CviAII	CATG	3 cut(s)	438, 649, 723
CviQI	GTAC	2 cut(s)	275, 688
DdeI	CTNAG	3 cut(s)	291, 457, 509
DpnI	GATC	5 cut(s)	39, 99, 466, 565, 639
DpnII	GATC	5 cut(s)	37, 97, 464, 563, 637
DraI	TTTAAA	2 cut(s)	81, 220
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	4, 252, 308
EcoRII	CCWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	441, 652, 726
FaiI	YATR	8 cut(s)	44, 46, 433, 439, 488, 496, 650, 724
FatI	CATG	3 cut(s)	437, 648, 722
Fnu4HI	GCNGC	3 cut(s)	75, 339, 342
FokI	GGATG	2 cut(s)	257, 644
Fsp4HI	GCNGC	3 cut(s)	75, 339, 342
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	3 cut(s)	75, 339, 342
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	441, 652, 726
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	4 cut(s)	312, 366, 520, 713
Hpy166II	GTNNAC	3 cut(s)	253, 480, 538
Hpy188I	TCNGA	2 cut(s)	331, 525
Hpy188III	TCNNGA	3 cut(s)	173, 459, 551
Hpy8I	GTNNAC	3 cut(s)	253, 480, 538
HpyAV	CCTTC	3 cut(s)	28, 520, 601
HpyCH4III	ACNGT	2 cut(s)	542, 687
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	4 cut(s)	253, 338, 400, 623
HpyF3I	CTNAG	3 cut(s)	291, 457, 509
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	441, 652, 726
Kzo9I	GATC	5 cut(s)	37, 97, 464, 563, 637
LmnI	GCTCC	3 cut(s)	93, 175, 203
Lsp1109I	GCAGC	3 cut(s)	61, 350, 353
LweI	GCATC	3 cut(s)	112, 235, 478
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	5 cut(s)	39, 99, 466, 565, 639
MboI	GATC	5 cut(s)	37, 97, 464, 563, 637
MboII	GAAGA	1 cut(s)	397
MflI	RGATCY	2 cut(s)	563, 637
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	5 cut(s)	65, 302, 450, 514, 591
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	9 cut(s)	133, 247, 292, 455, 504, 547, 591, 606, 628
MseI	TTAA	2 cut(s)	80, 219
MslI	CAYNNNNRTG	1 cut(s)	727
MspA1I	CMGCKG	2 cut(s)	74, 230
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NdeII	GATC	5 cut(s)	37, 97, 464, 563, 637
NlaIII	CATG	3 cut(s)	441, 652, 726
NlaIV	GGNNCC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	312, 366, 520, 713
PkrI	GCNGC	3 cut(s)	76, 340, 343
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	563, 637
PvuII	CAGCTG	2 cut(s)	74, 230
RsaI	GTAC	2 cut(s)	276, 689
RsaNI	GTAC	2 cut(s)	275, 688
RseI	CAYNNNNRTG	1 cut(s)	727
SaqAI	TTAA	2 cut(s)	80, 219
SatI	GCNGC	3 cut(s)	75, 339, 342
Sau3AI	GATC	5 cut(s)	37, 97, 464, 563, 637
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	9 cut(s)	31, 76, 90, 208, 232, 292, 346, 479, 622
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	112, 235, 478
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	727
Sse9I	AATT	5 cut(s)	65, 302, 450, 514, 591
SsiI	CCGC	2 cut(s)	187, 421
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	542, 687
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	550
TasI	AATT	5 cut(s)	65, 302, 450, 514, 591
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	4 cut(s)	312, 366, 520, 713
Tru1I	TTAA	2 cut(s)	80, 219
Tru9I	TTAA	2 cut(s)	80, 219
TscAI	CASTG	1 cut(s)	545
TseI	GCWGC	3 cut(s)	74, 338, 341
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	545
VneI	GTGCAC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.