Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

172199 .. 173245

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcctcagctcaaaccttagaggttgctacggagtcggtgacggcagttacgttcagcttctttacagatgaagaggcgcgaaatcagagcgttgcgaagattacgaagccggatttggttgacgaattaggaacgccggtgcaaggtgggctttacgatcccgcaatgggccctctcgacgacagaggcaacgcaccttgcaaaacatgtggtcagagtgcgtttaattgccggggtcattttggccatattgacatcgatttgcccgtttataatcccttgttgttcaatgttctttacaaacttctgcaaagaacctgcttatcctgtcaccattttcgaacaagccgagagctggttgaaaaatgtgtttcccaattggaactcgtgatgaaaggtgatgttgttgcggcaaaaagattagactctgactcacctgatgaatactcatatcttggagaggacggggaaggaaatgatattgagagagacaggcattcgaagccggaaagatggacatctcttcagttcacagaggcaatgtctattttggatcgttctctggagaaacaacaaaagtgcaagaattgtaaatttaagaatcctaaaatcactaaacctacttttggttggtttcagatggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

216

Amino Acids

24.32

Weight (kDa)

5.59

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	12 - 207	8.7e-24	RNA polymerase Rpb1, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	329
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	165, 413
AclWI	GGATC	2 cut(s)	155, 564
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	512
AfiI	CCNNNNNNNGG	4 cut(s)	146, 170, 358, 629
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	292, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	11, 60, 358
AluI	AGCT	3 cut(s)	11, 60, 358
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	155, 564
AoxI	GGCC	3 cut(s)	3, 172, 247
ApaI	GGGCCC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	172, 173
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	52, 326, 413, 429
AsuII	TTCGAA	2 cut(s)	343, 503
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	510, 637
BceAI	ACGGC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	172, 173
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	7
Bpu14I	TTCGAA	2 cut(s)	343, 503
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 170, 358, 629
Bse118I	RCCGGY	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	174, 549
Bse8I	GATNNNNATC	1 cut(s)	520
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	146, 170, 358, 629
BseMI	GCAATG	2 cut(s)	174, 549
BseMII	CTCAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	5, 174, 249
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	4 cut(s)	113, 140, 235, 509
BslI	CCNNNNNNNGG	4 cut(s)	146, 170, 358, 629
BsmAI	GTCTC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	3 cut(s)	5, 174, 249
Bsp119I	TTCGAA	2 cut(s)	343, 503
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	160, 556
BspACI	CCGC	2 cut(s)	165, 413
BspANI	GGCC	3 cut(s)	5, 174, 249
BspCNI	CTCAG	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	155, 564
BspT104I	TTCGAA	2 cut(s)	343, 503
BsrDI	GCAATG	2 cut(s)	174, 549
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	160, 556
BssSI	CACGAG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	389
Bst6I	CTCTTC	2 cut(s)	69, 531
BstBI	TTCGAA	2 cut(s)	343, 503
BstDEI	CTNAG	2 cut(s)	7, 19
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	163, 559
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	2 cut(s)	160, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 505
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	5, 174, 249
BsuTUI	ATCGAT	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	172, 173
ClaI	ATCGAT	1 cut(s)	261
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	7, 19
DpnI	GATC	2 cut(s)	162, 558
DpnII	GATC	2 cut(s)	160, 556
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	69, 531
EarI	CTCTTC	2 cut(s)	69, 531
Eco24I	GRGCYC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	1 cut(s)	213
FaiI	YATR	5 cut(s)	211, 252, 276, 454, 649
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	1 cut(s)	209
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	414
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	5, 174, 249
HapII	CCGG	4 cut(s)	113, 140, 235, 509
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	35, 428, 434, 604
HpaII	CCGG	4 cut(s)	113, 140, 235, 509
HphI	GGTGA	4 cut(s)	52, 326, 413, 429
Hpy166II	GTNNAC	2 cut(s)	124, 534
Hpy188I	TCNGA	4 cut(s)	90, 219, 433, 642
Hpy188III	TCNNGA	3 cut(s)	179, 391, 566
Hpy8I	GTNNAC	2 cut(s)	124, 534
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	145, 204, 313, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 505
HpyF3I	CTNAG	2 cut(s)	7, 19
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	213
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	160, 556
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	40, 49, 332
MalI	GATC	2 cut(s)	162, 558
MboI	GATC	2 cut(s)	160, 556
MboII	GAAGA	3 cut(s)	86, 112, 518
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	128, 229, 380, 589, 596
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	3 cut(s)	44, 422, 428
MnlI	CCTC	7 cut(s)	16, 16, 70, 182, 186, 457, 532
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	228, 600
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	4 cut(s)	113, 140, 235, 509
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	499
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	151, 505
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	160, 556
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	40, 332
NspI	RCATGY	1 cut(s)	213
NspV	TTCGAA	2 cut(s)	343, 503
PciI	ACATGT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	3 cut(s)	50, 267, 349
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	604
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	3 cut(s)	43, 422, 428
PpsI	GAGTC	3 cut(s)	43, 422, 428
PscI	ACATGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	174
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	172, 173
SaqAI	TTAA	2 cut(s)	228, 600
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	2 cut(s)	160, 556
Sau96I	GGNCC	2 cut(s)	172, 173
SchI	GAGTC	3 cut(s)	44, 422, 428
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	176
SfuI	TTCGAA	2 cut(s)	343, 503
SgrAI	CRCCGGYG	1 cut(s)	139
Sse9I	AATT	5 cut(s)	128, 229, 380, 589, 596
SsiI	CCGC	2 cut(s)	165, 413
StyD4I	CCNGG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	4 cut(s)	180, 261, 343, 503
TasI	AATT	5 cut(s)	128, 229, 380, 589, 596
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	228, 600
Tru9I	TTAA	2 cut(s)	228, 600
TseFI	GTSAC	2 cut(s)	40, 332
Tsp45I	GTSAC	2 cut(s)	40, 332
TspDTI	ATGAA	3 cut(s)	87, 410, 459
TspGWI	ACGGA	1 cut(s)	47
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.