Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001576.1

Orthogroup ID

OG0027971

Physical Location & Seq

Genomic Coordinates Forward (+)

72417 .. 72878

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggatccagacgccttctctgcaagtatgttcaaatgggacctacgaggcatggcggttccgccgagccgggttcagctcgaggcggcggcagtagcgccacaacaagctgcggctgcggccgctgccgcagccgcgggttactcggtgcgggggccgagggaggttgtggggctggaggacatgttccgggcgtacggagtgaggtactacacagcggcgaggatagcggacctagggttcactgtgagcacgcttttggacatgaaagatgaggagcttgacgacatgatgaacagcgtatctcagtttttccgggtggagctactcgtcggtgagaggtacggcattaaggccgccatcagagccgagaggagacgccttgaggaagaggactcgcggaggcgccactctctctccggcgacaccaacgctatggatgctctctctcaagaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010476 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0031490 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C_LFY_FLO LFY_SAM

Protein Analysis

153

Amino Acids

16.83

Weight (kDa)

4.97

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_LFY	PF01698	55 - 132	3e-40	Floricaula / Leafy protein SAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027971)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09660
rosa_multiflora	Rmu_sc0001576.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AccII	CGCG	2 cut(s)	137, 400
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	120
AcyI	GRCGYC	3 cut(s)	12, 379, 406
AfaI	GTAC	3 cut(s)	197, 209, 344
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	34
AloI	GAACNNNNNNTCC	4 cut(s)	170, 202, 224, 256
AluBI	AGCT	4 cut(s)	79, 110, 280, 325
AluI	AGCT	4 cut(s)	79, 110, 280, 325
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	120, 155, 354
ApeKI	GCWGC	4 cut(s)	110, 116, 125, 131
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	100, 408
AspS9I	GGNCC	3 cut(s)	40, 155, 232
AsuC2I	CCSGG	3 cut(s)	71, 191, 317
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	40, 232
AvrII	CCTAGG	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	4 cut(s)	97, 103, 112, 143
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	361
BcnI	CCSGG	3 cut(s)	71, 191, 317
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	2 cut(s)	101, 409
BlnI	CCTAGG	1 cut(s)	235
Bme1390I	CCNGG	3 cut(s)	71, 191, 317
Bme18I	GGWCC	2 cut(s)	40, 232
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	40, 155, 232
BmiI	GGNNCC	5 cut(s)	6, 41, 60, 156, 407
BmrFI	CCNGG	3 cut(s)	71, 191, 317
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	404, 435
BpuMI	CCSGG	3 cut(s)	71, 191, 317
BsaHI	GRCGYC	3 cut(s)	12, 379, 406
BsaJI	CCNNGG	3 cut(s)	135, 158, 235
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 401, 431
BseDI	CCNNGG	3 cut(s)	135, 158, 235
BseGI	GGATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	290, 388
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	97, 103, 112, 143
Bsh1236I	CGCG	2 cut(s)	137, 400
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	122, 157, 356
BshNI	GGYRCC	1 cut(s)	405
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	4 cut(s)	70, 190, 316, 420
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	122, 157, 356
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	3 cut(s)	122, 157, 356
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	2 cut(s)	137, 400
BspLI	GGNNCC	5 cut(s)	6, 41, 60, 156, 407
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	135, 158, 235
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	3 cut(s)	12, 379, 406
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	3 cut(s)	12, 379, 406
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	2 cut(s)	137, 400
BstH2I	RGCGCY	2 cut(s)	101, 409
BstHHI	GCGC	2 cut(s)	100, 408
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	69, 189, 315
BstUI	CGCG	2 cut(s)	137, 400
BstV1I	GCAGC	4 cut(s)	97, 103, 112, 143
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	122, 157, 356
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	254
CciNI	GCGGCCGC	1 cut(s)	120
CfoI	GCGC	2 cut(s)	100, 408
Cfr13I	GGNCC	3 cut(s)	40, 155, 232
Cfr42I	CCGCGG	1 cut(s)	138
CseI	GACGC	2 cut(s)	20, 387
Csp6I	GTAC	3 cut(s)	196, 208, 343
CviAII	CATG	4 cut(s)	52, 184, 265, 289
CviQI	GTAC	3 cut(s)	196, 208, 343
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	407
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	40, 232
Eco52I	CGGCCG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	235
EgeI	GGCGCC	1 cut(s)	407
EheI	GGCGCC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	4 cut(s)	55, 187, 268, 292
FaiI	YATR	6 cut(s)	29, 53, 185, 266, 290, 437
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	4 cut(s)	51, 183, 264, 288
FauI	CCCGC	2 cut(s)	130, 144
FokI	GGATG	1 cut(s)	452
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	99, 407
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	2 cut(s)	101, 409
HaeIII	GGCC	3 cut(s)	122, 157, 356
HapII	CCGG	4 cut(s)	70, 190, 316, 420
HgaI	GACGC	2 cut(s)	20, 387
HhaI	GCGC	2 cut(s)	100, 408
Hin1I	GRCGYC	3 cut(s)	12, 379, 406
Hin1II	CATG	4 cut(s)	55, 187, 268, 292
Hin6I	GCGC	2 cut(s)	98, 406
HinP1I	GCGC	2 cut(s)	98, 406
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	4 cut(s)	70, 190, 316, 420
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	8, 452
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	25, 449
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	3 cut(s)	12, 379, 406
Hsp92II	CATG	4 cut(s)	55, 187, 268, 292
HspAI	GCGC	2 cut(s)	98, 406
KasI	GGCGCC	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	277, 322
LpnPI	CCDG	6 cut(s)	21, 83, 161, 203, 329, 433
Lsp1109I	GCAGC	4 cut(s)	97, 103, 112, 143
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	401
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	389
MseI	TTAA	2 cut(s)	351, 460
MspA1I	CMGCKG	3 cut(s)	125, 137, 218
MspI	CCGG	4 cut(s)	70, 190, 316, 420
MspR9I	CCNGG	3 cut(s)	71, 191, 317
MvnI	CGCG	2 cut(s)	137, 400
NarI	GGCGCC	1 cut(s)	406
NciI	CCSGG	3 cut(s)	71, 191, 317
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	55, 187, 268, 292
NlaIV	GGNNCC	5 cut(s)	6, 41, 60, 156, 407
NmeAIII	GCCGAG	3 cut(s)	90, 183, 394
NotI	GCGGCCGC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	80
PciI	ACATGT	1 cut(s)	183
Pfl23II	CGTACG	1 cut(s)	195
PleI	GAGTC	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	40
PspLI	CGTACG	1 cut(s)	195
PspN4I	GGNNCC	5 cut(s)	6, 41, 60, 156, 407
PspPI	GGNCC	3 cut(s)	40, 155, 232
PspPPI	RGGWCCY	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	197, 209, 344
RsaNI	GTAC	3 cut(s)	196, 208, 343
SacII	CCGCGG	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	351, 460
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	40, 155, 232
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	3 cut(s)	71, 191, 317
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	430
SfoI	GGCGCC	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	80
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	40, 232
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	3 cut(s)	80, 383, 450
SmoI	CTYRAG	3 cut(s)	80, 383, 450
SspDI	GGCGCC	1 cut(s)	405
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	69, 189, 315
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	81
TauI	GCSGC	9 cut(s)	89, 92, 116, 122, 125, 131, 137, 221, 359
Tru1I	TTAA	2 cut(s)	351, 460
Tru9I	TTAA	2 cut(s)	351, 460
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	4 cut(s)	110, 116, 125, 131
TspDTI	ATGAA	2 cut(s)	281, 308
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	40, 232
XceI	RCATGY	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	235
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.