Rmu_sc0001576.1_g000021

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
N/A
Physical Location & Seq
Reverse (-)
89267 .. 89656
390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
atggtcttctgtaaccagttcaactgtgacaaagtaatgctgttttggaagaaacataacggtgctgagaatgtctcacgatcttggagatgtttgaggataaagttctcaaagatgtttgaggataaagttctcaagccatggccatcttgttgttcaaaaccattctcccaaagagggtttcaaaagatcaataccgttaagattttatatccagaggagcttcaaaacgttggatttgttaagggtgttgttgaatctgatgacttgccactcaaaatctcttgtgagatccttcaacaaaacaagatgttgaaggtgagcacgaagaaccttgtgaataagtgcagtgaaatgttcaatctagttgctgagaacaaagaggactaa

Protein Analysis

129

Amino Acids

15.07

Weight (kDa)

9.11

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 78 - 128 1.4e-16 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 231
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 8 cut(s) 22, 159, 185, 227, 257, 299, 316, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 286
AoxI GGCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 331
BalI TGGCCA 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 326
BccI CCATC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 57, 363
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 80, 189, 291
Bsp19I CCATGG 1 cut(s) 140
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 58, 364
BspPI GGATC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 80, 189, 291
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 26, 62, 199
BstDEI CTNAG 2 cut(s) 66, 372
BstDSI CCRYGG 1 cut(s) 140
BstKTI GATC 3 cut(s) 83, 192, 294
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 3 cut(s) 80, 189, 291
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 139, 145, 223
CviKI_1 RGCY 3 cut(s) 139, 145, 223
DdeI CTNAG 2 cut(s) 66, 372
DpnI GATC 3 cut(s) 82, 191, 293
DpnII GATC 3 cut(s) 80, 189, 291
EaeI YGGCCR 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 144
FaiI YATR 3 cut(s) 57, 142, 211
FatI CATG 1 cut(s) 140
FspBI CTAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 1 cut(s) 144
HinfI GANTC 1 cut(s) 257
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 78, 215
HpyAV CCTTC 2 cut(s) 305, 310
HpyCH4III ACNGT 3 cut(s) 26, 62, 199
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 348
HpyF3I CTNAG 2 cut(s) 66, 372
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 3 cut(s) 80, 189, 291
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 29, 228
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 11, 26
MalI GATC 3 cut(s) 82, 191, 293
MboI GATC 3 cut(s) 80, 189, 291
MboII GAAGA 2 cut(s) 61, 340
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 145
MluNI TGGCCA 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 5 cut(s) 90, 115, 170, 211, 376
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 2 cut(s) 201, 243
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 145
NcoI CCATGG 1 cut(s) 140
NdeII GATC 3 cut(s) 80, 189, 291
NlaIII CATG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 231
PsuI RGATCY 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 201, 243
Sau3AI GATC 3 cut(s) 80, 189, 291
SduI GDGCHC 1 cut(s) 326
SetI ASST 4 cut(s) 225, 234, 321, 336
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 3 cut(s) 26, 62, 199
TaiI ACGT 1 cut(s) 234
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 201, 243
Tru9I TTAA 2 cut(s) 201, 243
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspRI CASTG 1 cut(s) 355
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.