Rmu_sc0001579.1_g000011

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001579.1
N/A
Physical Location & Seq
Forward (+)
73966 .. 74593
628 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
atggatagaggttcgtatcatatcaaatggcaacatcctgtcgactttttctctgctagggttttctccctagccgaaaaactgatcgagcgttgggcagcgatggcggcggaagatgggatggggactcttgccttgtcgaatgcggccgtagtgagcctggaggtgaaagaccaggttctacacggcggcccttggtactatagtaactcgatgctgttgttggcgaactacgacggggctagcactctaccagagattcctatgcactgtttggaggtttgggtggtggtgaagggtctgagagtttccatgagcaatgatcgggctttaacccggattggcaatgttttgggaacttttgttagggctgaccaacttgcgttgcggaggaaggaggctgtccaacgaatccggctgatccatgacgttcgccggcgggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

9.51

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 6 cut(s) 107, 110, 146, 189, 388, 439
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 200
AjnI CCWGG 2 cut(s) 159, 174
AlwI GGATC 1 cut(s) 415
AoxI GGCC 2 cut(s) 147, 190
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 178, 304
AsuNHI GCTAGC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 97, 110, 115
BceAI ACGGC 2 cut(s) 134, 202
BciT130I CCWGG 2 cut(s) 161, 176
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 4 cut(s) 57, 71, 243, 445
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 4 cut(s) 99, 108, 147, 190
BlsI GCNGC 4 cut(s) 100, 109, 148, 191
Bme1390I CCNGG 3 cut(s) 161, 176, 337
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 161, 176, 337
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 435
Bse3DI GCAATG 2 cut(s) 325, 352
BseBI CCWGG 2 cut(s) 161, 176
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 34, 126
BseMI GCAATG 2 cut(s) 325, 352
BseMII CTCAG 1 cut(s) 293
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 149, 192
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 337, 415, 436
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 2 cut(s) 149, 192
Bsp143I GATC 3 cut(s) 84, 322, 420
BspACI CCGC 6 cut(s) 107, 110, 146, 189, 388, 439
BspANI GGCC 2 cut(s) 149, 192
BspCNI CTCAG 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 415
BsrDI GCAATG 2 cut(s) 325, 352
BsrFI RCCGGY 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 84, 322, 420
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 161, 176
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 244, 437
BstDEI CTNAG 1 cut(s) 302
BstF5I GGATG 2 cut(s) 34, 126
BstKTI GATC 3 cut(s) 87, 325, 423
BstMBI GATC 3 cut(s) 84, 322, 420
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 104, 107
BstNI CCWGG 2 cut(s) 161, 176
BstSCI CCNGG 3 cut(s) 159, 174, 335
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 110
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 149, 192
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 34, 126
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 244, 437
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 313, 425
CviJI RGCY 9 cut(s) 74, 149, 159, 192, 242, 329, 371, 401, 418
CviKI_1 RGCY 9 cut(s) 74, 149, 159, 192, 242, 329, 371, 401, 418
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 302
DpnI GATC 3 cut(s) 86, 324, 422
DpnII GATC 3 cut(s) 84, 322, 420
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 194
Eco52I CGGCCG 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 159, 174
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 316, 428
FaiI YATR 5 cut(s) 21, 204, 266, 314, 426
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 312, 424
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 99, 108, 147, 190
FokI GGATG 2 cut(s) 21, 133
Fsp4HI GCNGC 4 cut(s) 99, 108, 147, 190
FspBI CTAG 4 cut(s) 57, 71, 243, 445
GluI GCNGC 4 cut(s) 99, 108, 147, 190
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 2 cut(s) 149, 192
HapII CCGG 3 cut(s) 337, 415, 436
Hin1II CATG 2 cut(s) 316, 428
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 127, 259, 411
HpaII CCGG 3 cut(s) 337, 415, 436
HphI GGTGA 2 cut(s) 178, 304
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 289, 388
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 107
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 316, 428
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Kzo9I GATC 3 cut(s) 84, 322, 420
LpnPI CCDG 8 cut(s) 51, 146, 161, 173, 188, 267, 350, 428
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 174
MaeI CTAG 4 cut(s) 57, 71, 243, 445
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 86, 324, 422
MboI GATC 3 cut(s) 84, 322, 420
MboII GAAGA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 4 cut(s) 157, 271, 384, 391
MreI CGCCGGCG 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 435
MseI TTAA 1 cut(s) 332
MspI CCGG 3 cut(s) 337, 415, 436
MspR9I CCNGG 3 cut(s) 161, 176, 337
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 2 cut(s) 161, 176
MwoI GCNNNNNNNGC 2 cut(s) 104, 107
NaeI GCCGGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 337
NdeII GATC 3 cut(s) 84, 322, 420
NgoMIV GCCGGC 1 cut(s) 435
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 316, 428
PctI GAATGC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 259, 411
PkrI GCNGC 4 cut(s) 100, 109, 148, 191
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 159, 174
PspGI CCWGG 2 cut(s) 159, 174
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 4 cut(s) 99, 108, 147, 190
Sau3AI GATC 3 cut(s) 84, 322, 420
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 3 cut(s) 161, 176, 337
SetI ASST 5 cut(s) 13, 168, 180, 282, 432
SexAI ACCWGGT 1 cut(s) 174
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 435
SsiI CCGC 6 cut(s) 107, 110, 146, 189, 388, 439
SspMI CTAG 4 cut(s) 57, 71, 243, 445
StyD4I CCNGG 3 cut(s) 159, 174, 335
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 42, 87, 140, 212
TauI GCSGC 3 cut(s) 110, 149, 192
TfiI GAWTC 2 cut(s) 259, 411
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 98
TspRI CASTG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 4 cut(s) 57, 71, 243, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.