Rmu_sc0001598.1_g000023

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001598.1
N/A
Physical Location & Seq
Forward (+)
104649 .. 106029
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atggcgctgtataggaggaaggcatggcatattggaccggtttccctgtgcaacaaggcagcagaagaaagagccaagaggggattagtggaaagctctgctgctgagcaacaccagtgcttgaaatggcttgattctaagaaacccaattcagttgtatatgtatgtttcagaagcatgatcaacttagctggctgtcagctccgagaaattgcaacaggccttgaggcttatggacaagacttcatttgggttgtgaagaaacaaaagaaagagatagaagagtggtggcctgaaggatttgggaagagaatggaagaagtctctgttgggatatcgatgatcacctggctggtgtctgctgataacttttacactgagaagttggtgacgcagatattctgtgttggggttgttgttggtgctgaaaaaaagcgagaaaaacctctacggccttcggcgtcctcgtctgtgaagatcagtcctgtccggtggcacccggacatcttggctggcctctggtctcaccgatgtactgcggtgtcgtctctgattcggggtggcaggtgcttcgtcgtgggtttccaggaccggcgtgagatgtttggattgttgagcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

207

Amino Acids

23.48

Weight (kDa)

9.39

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 495
AciI CCGC 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 2 cut(s) 347, 585
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 96, 191, 202
AluI AGCT 3 cut(s) 96, 191, 202
Alw26I GTCTC 3 cut(s) 328, 528, 552
AoxI GGCC 4 cut(s) 220, 290, 452, 514
ApeKI GCWGC 2 cut(s) 59, 101
AsiGI ACCGGT 1 cut(s) 37
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 35, 589
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 337, 400, 518
AvaII GGWCC 2 cut(s) 35, 589
BanI GGYRCC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 71, 88
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 2 cut(s) 349, 587
BclI TGATCA 2 cut(s) 180, 342
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 3 cut(s) 328, 528, 552
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 2 cut(s) 60, 102
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 2 cut(s) 61, 103
Bme1390I CCNGG 3 cut(s) 349, 500, 587
Bme18I GGWCC 2 cut(s) 35, 589
BmgT120I GGNCC 2 cut(s) 35, 589
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 3 cut(s) 349, 500, 587
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 528
BsaWI WCCGGW 2 cut(s) 37, 489
Bse118I RCCGGY 2 cut(s) 37, 591
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 349, 587
BseCI ATCGAT 1 cut(s) 338
BseMII CTCAG 2 cut(s) 96, 369
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 71, 88
BshFI GGCC 4 cut(s) 222, 292, 454, 516
BshNI GGYRCC 1 cut(s) 495
BshTI ACCGGT 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 338
BsiSI CCGG 4 cut(s) 38, 490, 500, 592
BsmAI GTCTC 3 cut(s) 328, 528, 552
BsmBI CGTCTC 1 cut(s) 552
BsnI GGCC 4 cut(s) 222, 292, 454, 516
Bso31I GGTCTC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 180, 342, 477
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 539
BspANI GGCC 4 cut(s) 222, 292, 454, 516
BspCNI CTCAG 2 cut(s) 97, 370
BspDI ATCGAT 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 497
BspMI ACCTGC 1 cut(s) 555
BspT107I GGYRCC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 528
BsrFI RCCGGY 2 cut(s) 37, 591
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 2 cut(s) 37, 591
BssMI GATC 3 cut(s) 180, 342, 477
BssNI GRCGYC 1 cut(s) 461
Bst2UI CCWGG 2 cut(s) 349, 587
Bst6I CTCTTC 2 cut(s) 276, 302
BstACI GRCGYC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 193, 514
BstDEI CTNAG 4 cut(s) 105, 138, 187, 378
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 183, 345, 480
BstMAI GTCTC 3 cut(s) 328, 528, 552
BstMBI GATC 3 cut(s) 180, 342, 477
BstNI CCWGG 2 cut(s) 349, 587
BstSCI CCNGG 3 cut(s) 347, 498, 585
BstV1I GCAGC 2 cut(s) 71, 88
Bsu15I ATCGAT 1 cut(s) 338
BsuRI GGCC 4 cut(s) 222, 292, 454, 516
BsuTUI ATCGAT 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 122, 375
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 193, 514
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 37, 591
Cfr13I GGNCC 2 cut(s) 35, 589
ClaI ATCGAT 1 cut(s) 338
CseI GACGC 2 cut(s) 400, 450
Csp6I GTAC 1 cut(s) 534
CspAI ACCGGT 1 cut(s) 37
CviAII CATG 2 cut(s) 24, 178
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 105, 138, 187, 378
DpnI GATC 3 cut(s) 182, 344, 479
DpnII GATC 3 cut(s) 180, 342, 477
Eam1104I CTCTTC 2 cut(s) 276, 302
EarI CTCTTC 2 cut(s) 276, 302
Eco147I AGGCCT 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 528
Eco32I GATATC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 35, 589
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 347, 585
EcoRV GATATC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 2 cut(s) 27, 181
FaiI YATR 8 cut(s) 12, 25, 30, 160, 162, 166, 179, 234
FatI CATG 2 cut(s) 23, 177
FbaI TGATCA 2 cut(s) 180, 342
Fnu4HI GCNGC 2 cut(s) 60, 102
Fsp4HI GCNGC 2 cut(s) 60, 102
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 60, 102
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 222, 292, 454, 516
HapII CCGG 4 cut(s) 38, 490, 500, 592
HgaI GACGC 2 cut(s) 400, 450
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 2 cut(s) 27, 181
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 134, 553
HpaII CCGG 4 cut(s) 38, 490, 500, 592
HphI GGTGA 3 cut(s) 337, 400, 518
Hpy188I TCNGA 4 cut(s) 173, 206, 552, 623
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 3 cut(s) 13, 290, 465
HpyCH4V TGCA 2 cut(s) 51, 215
HpyF3I CTNAG 4 cut(s) 105, 138, 187, 378
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 2 cut(s) 27, 181
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 2 cut(s) 180, 342
Kzo9I GATC 3 cut(s) 180, 342, 477
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 71, 88
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 182, 344, 479
MboI GATC 3 cut(s) 180, 342, 477
MboII GAAGA 6 cut(s) 77, 271, 293, 319, 329, 487
MluCI AATT 2 cut(s) 148, 210
MnlI CCTC 6 cut(s) 9, 72, 220, 456, 475, 527
MspI CCGG 4 cut(s) 38, 490, 500, 592
MspR9I CCNGG 3 cut(s) 349, 500, 587
MvaI CCWGG 2 cut(s) 349, 587
NciI CCSGG 1 cut(s) 500
NdeII GATC 3 cut(s) 180, 342, 477
NlaIII CATG 2 cut(s) 27, 181
NlaIV GGNNCC 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PfeI GAWTC 2 cut(s) 134, 553
PfoI TCCNGGA 1 cut(s) 585
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 2 cut(s) 61, 103
Psp6I CCWGG 2 cut(s) 347, 585
PspGI CCWGG 2 cut(s) 347, 585
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 2 cut(s) 35, 589
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
SatI GCNGC 2 cut(s) 60, 102
Sau3AI GATC 3 cut(s) 180, 342, 477
Sau96I GGNCC 2 cut(s) 35, 589
ScrFI CCNGG 3 cut(s) 349, 500, 587
SetI ASST 6 cut(s) 98, 193, 204, 350, 448, 569
SinI GGWCC 2 cut(s) 35, 589
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 148, 210
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 1 cut(s) 539
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 347, 498, 585
TaqI TCGA 1 cut(s) 338
TasI AATT 2 cut(s) 148, 210
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 2 cut(s) 134, 553
TscAI CASTG 2 cut(s) 122, 382
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 59, 101
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 2 cut(s) 122, 382
VpaK11BI GGWCC 2 cut(s) 35, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.