Rmu_sc0001599.1_g000018

Ribosomal L40e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001599.1
N/A
Physical Location & Seq
Reverse (-)
84289 .. 86414
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
atgcgcgtcaaggccaagatccaggagaaggaaagtatccccccggaccagcaaatgctcattttcatcggaaagcagctcgaggatggtcgtactcctgctaagtacaacattcagaaagaatcaactctgcatttggttctgaggcttcatggtgttattatcgagccttctctcagggcattaactagaaagtataaccaagagaagatgatctgccgcaagtgttatgcactccttcattgtgttgttgtcaactgtaggaagaagtgtggacacaacaaccagctagttgaggcgaaagaagaagatcaagttgtaagtttgtactttataatgaaatcgttagtacagttataccaaataccaatggtggacaagaagagtcttgcagcagcccctagcggctgcagcctccagcctgcgcatatcctccttccagccttcttccggcctcctccccaaacactgaccgaccttacctcaccggccaaccgcctcaagcaccgagcaccgatccaagtatccccaaacaccgatcccagcagcccggatcaccgatcccaccaatcacctatcacctgtagctgcacagaggcacctgcaaaccagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L40e ubiquitin

Protein Analysis

204

Amino Acids

22.98

Weight (kDa)

9.32

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 50 1.9e-16 Ubiquitin family
Rad60-SLD PF11976 3 - 48 2.1e-07 Ubiquitin-2 like Rad60 SUMO-like
Ribosomal_L40e PF01020 55 - 102 2.2e-20 Ribosomal L40e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AarI CACCTGC 1 cut(s) 610
Acc16I TGCGCA 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 598
AccII CGCG 1 cut(s) 6
AciI CCGC 3 cut(s) 220, 405, 496
AclWI GGATC 5 cut(s) 13, 511, 533, 555, 561
AcoI YGGCCR 1 cut(s) 489
AfaI GTAC 4 cut(s) 94, 107, 329, 351
AfiI CCNNNNNNNGG 2 cut(s) 28, 450
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 79, 289, 588
AluI AGCT 3 cut(s) 79, 289, 588
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 5 cut(s) 13, 511, 533, 555, 561
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 3 cut(s) 12, 452, 489
ApeKI GCWGC 7 cut(s) 76, 392, 395, 408, 411, 546, 588
AspLEI GCGC 2 cut(s) 6, 427
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 2 cut(s) 44, 551
AsuHPI GGTGA 4 cut(s) 477, 548, 564, 571
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 7 cut(s) 88, 395, 404, 407, 423, 558, 575
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 47, 535
BcnI CCSGG 2 cut(s) 44, 551
BfaI CTAG 3 cut(s) 189, 290, 402
BfmI CTRYAG 3 cut(s) 259, 409, 583
BfuAI ACCTGC 1 cut(s) 610
BfuI GTATCC 2 cut(s) 47, 535
BisI GCNGC 9 cut(s) 77, 220, 393, 396, 406, 409, 412, 547, 589
BlsI GCNGC 9 cut(s) 78, 221, 394, 397, 407, 410, 413, 548, 590
Bme1390I CCNGG 3 cut(s) 23, 44, 551
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 3 cut(s) 23, 44, 551
BpmI CTGGAG 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 44, 551
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 450
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 610
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 28, 450
BseMII CTCAG 2 cut(s) 134, 190
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 7 cut(s) 88, 395, 404, 407, 423, 558, 575
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 3 cut(s) 14, 454, 491
BshNI GGYRCC 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 4 cut(s) 44, 451, 488, 551
BslI CCNNNNNNNGG 2 cut(s) 28, 450
BsnI GGCC 3 cut(s) 14, 454, 491
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
BspACI CCGC 3 cut(s) 220, 405, 496
BspANI GGCC 3 cut(s) 14, 454, 491
BspCNI CTCAG 2 cut(s) 135, 189
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 600
BspMAI CTGCAG 1 cut(s) 413
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 5 cut(s) 13, 511, 533, 555, 561
BspT107I GGYRCC 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 1 cut(s) 610
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 260, 354
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 102, 143, 176
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 2 cut(s) 6, 427
BstKTI GATC 7 cut(s) 21, 216, 313, 519, 541, 556, 563
BstMBI GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 21, 42, 549
BstSFI CTRYAG 3 cut(s) 259, 409, 583
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 7 cut(s) 88, 395, 404, 407, 423, 558, 575
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuI GTATCC 2 cut(s) 47, 535
BsuRI GGCC 3 cut(s) 14, 454, 491
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 467
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 2 cut(s) 6, 427
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 93, 106, 328, 350
CviAII CATG 1 cut(s) 152
CviQI GTAC 4 cut(s) 93, 106, 328, 350
DdeI CTNAG 3 cut(s) 102, 143, 176
DpnI GATC 7 cut(s) 20, 215, 312, 518, 540, 555, 562
DpnII GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 153, 198, 231, 335, 358, 429
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 9 cut(s) 77, 220, 393, 396, 406, 409, 412, 547, 589
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 9 cut(s) 77, 220, 393, 396, 406, 409, 412, 547, 589
FspBI CTAG 3 cut(s) 189, 290, 402
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 2 cut(s) 5, 426
GluI GCNGC 9 cut(s) 77, 220, 393, 396, 406, 409, 412, 547, 589
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 3 cut(s) 14, 454, 491
HapII CCGG 4 cut(s) 44, 451, 488, 551
HhaI GCGC 2 cut(s) 6, 427
Hin1II CATG 1 cut(s) 155
Hin6I GCGC 2 cut(s) 4, 425
HinP1I GCGC 2 cut(s) 4, 425
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 122, 385
HpaII CCGG 4 cut(s) 44, 451, 488, 551
HphI GGTGA 4 cut(s) 477, 548, 564, 571
Hpy166II GTNNAC 3 cut(s) 256, 275, 376
Hpy188I TCNGA 3 cut(s) 71, 117, 144
Hpy8I GTNNAC 3 cut(s) 256, 275, 376
HpyAV CCTTC 5 cut(s) 22, 180, 248, 446, 454
HpyCH4III ACNGT 2 cut(s) 260, 354
HpyCH4V TGCA 6 cut(s) 133, 233, 392, 411, 591, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 3 cut(s) 102, 143, 176
Hsp92II CATG 1 cut(s) 155
HspAI GCGC 2 cut(s) 4, 425
Kzo9I GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
Lsp1109I GCAGC 7 cut(s) 88, 395, 404, 407, 423, 558, 575
MaeI CTAG 3 cut(s) 189, 290, 402
MalI GATC 7 cut(s) 20, 215, 312, 518, 540, 555, 562
MboI GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
MboII GAAGA 6 cut(s) 220, 277, 317, 320, 394, 439
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 514
MlyI GAGTC 1 cut(s) 394
MseI TTAA 1 cut(s) 185
MspI CCGG 4 cut(s) 44, 451, 488, 551
MspR9I CCNGG 3 cut(s) 23, 44, 551
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 2 cut(s) 44, 551
NdeII GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 600
NsbI TGCGCA 1 cut(s) 426
PaeR7I CTCGAG 1 cut(s) 80
PaqCI CACCTGC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 9 cut(s) 78, 221, 394, 397, 407, 410, 413, 548, 590
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 80
PstI CTGCAG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 4 cut(s) 94, 107, 329, 351
RsaNI GTAC 4 cut(s) 93, 106, 328, 350
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 9 cut(s) 77, 220, 393, 396, 406, 409, 412, 547, 589
Sau3AI GATC 7 cut(s) 18, 213, 310, 516, 538, 553, 560
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 23, 44, 551
SduI GDGCHC 1 cut(s) 514
SetI ASST 8 cut(s) 81, 291, 480, 485, 577, 584, 590, 604
SfcI CTRYAG 3 cut(s) 259, 409, 583
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 80, 500
SmoI CTYRAG 2 cut(s) 80, 500
SsiI CCGC 3 cut(s) 220, 405, 496
SspMI CTAG 3 cut(s) 189, 290, 402
StyD4I CCNGG 3 cut(s) 21, 42, 549
TaaI ACNGT 2 cut(s) 260, 354
TaqI TCGA 2 cut(s) 81, 165
TaqII GACCGA 1 cut(s) 488
TatI WGTACW 3 cut(s) 105, 327, 349
TauI GCSGC 2 cut(s) 222, 408
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 474
TseI GCWGC 7 cut(s) 76, 392, 395, 408, 411, 546, 588
TspDTI ATGAA 4 cut(s) 55, 140, 230, 353
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 80
XspI CTAG 3 cut(s) 189, 290, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.