Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001599.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

88916 .. 92548

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcactacttgaaggcaatgaccaaagagacctttcgattacatcatccatttcaatccattgctattgcccaagatgtgaaaataaaaggttacgagatcaaggctaatacacaagttatggttaatgcatgggcgcttggaagagactctaagtcatacacaaatcctgggcggtacgagccagaaagatttttagacaatgccatagactataaagggaataacttcgaactaatttcatttggggctgggagacggggttgccttggaattcagtttgcaacggccgcctcctccacatttctaatctccagtcgatctgaacacagaacacacatgattcatgctgctcagtttctccatagctgggccgtctcctccgccgatgctgtgatgcccagacgccgtgacgcagatcgagaccacgccgaggccgagacgcagatcgagaccacgccgaggccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

9.13

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 105	1e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	175, 291, 384
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	370, 433, 462
AgsI	TTSAA	2 cut(s)	13, 56
AhdI	GACNNNNNGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw26I	GTCTC	7 cut(s)	23, 141, 250, 382, 417, 434, 446
AoxI	GGCC	4 cut(s)	288, 372, 435, 464
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	372
AsuII	TTCGAA	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	337
BceAI	ACGGC	3 cut(s)	303, 359, 393
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	7 cut(s)	23, 141, 250, 382, 417, 434, 446
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	2 cut(s)	291, 351
BlsI	GCNGC	2 cut(s)	292, 352
Bme1390I	CCNGG	1 cut(s)	171
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	2 cut(s)	379, 387
BpmI	CTGGAG	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	3 cut(s)	23, 417, 446
BsaJI	CCNNGG	4 cut(s)	170, 268, 432, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 433, 462
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	2 cut(s)	24, 60
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	170, 268, 432, 461
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	370, 433, 462
BseMI	GCAATG	2 cut(s)	24, 60
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	286, 370
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	337
BseYI	CCCAGC	2 cut(s)	251, 369
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	290, 374, 437, 466
BsiEI	CGRYCG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	370, 433, 462
BsmAI	GTCTC	7 cut(s)	23, 141, 250, 382, 417, 434, 446
BsmBI	CGTCTC	3 cut(s)	250, 382, 434
BsnI	GGCC	4 cut(s)	290, 374, 437, 466
Bso31I	GGTCTC	3 cut(s)	23, 417, 446
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	99, 320, 418, 447
BspACI	CCGC	3 cut(s)	175, 291, 384
BspANI	GGCC	4 cut(s)	290, 374, 437, 466
BspCNI	CTCAG	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	231
BspTNI	GGTCTC	3 cut(s)	23, 417, 446
BsrDI	GCAATG	2 cut(s)	24, 60
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	170, 268, 432, 461
BssMI	GATC	4 cut(s)	99, 320, 418, 447
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	153, 354
BstF5I	GGATG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	102, 323, 421, 450
BstMAI	GTCTC	7 cut(s)	23, 141, 250, 382, 417, 434, 446
BstMBI	GATC	4 cut(s)	99, 320, 418, 447
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 290
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	290, 374, 437, 466
BtsCI	GGATG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	3 cut(s)	414, 422, 451
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	132, 340, 347, 468
CviJI	RGCY	8 cut(s)	107, 184, 251, 290, 369, 374, 437, 466
CviKI_1	RGCY	8 cut(s)	107, 184, 251, 290, 369, 374, 437, 466
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	153, 354
DpnI	GATC	4 cut(s)	101, 322, 420, 449
DpnII	GATC	4 cut(s)	99, 320, 418, 447
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	268
Eco31I	GGTCTC	3 cut(s)	23, 417, 446
Eco52I	CGGCCG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	3 cut(s)	250, 382, 434
FaeI	CATG	4 cut(s)	135, 343, 350, 471
FaiI	YATR	9 cut(s)	122, 133, 160, 209, 216, 341, 348, 366, 469
FatI	CATG	4 cut(s)	131, 339, 346, 467
Fnu4HI	GCNGC	2 cut(s)	291, 351
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	291, 351
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	291, 351
GsaI	CCCAGC	2 cut(s)	255, 373
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	290, 374, 437, 466
HgaI	GACGC	3 cut(s)	414, 422, 451
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	4 cut(s)	135, 343, 350, 471
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	2 cut(s)	149, 343
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	422, 451
HpyAV	CCTTC	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	4, 131, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 290
HpyF3I	CTNAG	2 cut(s)	153, 354
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	135, 343, 350, 471
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	99, 320, 418, 447
LpnPI	CCDG	7 cut(s)	156, 183, 198, 237, 328, 355, 415
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	379, 387
MaeIII	GTNAC	2 cut(s)	92, 410
MalI	GATC	4 cut(s)	101, 322, 420, 449
MboI	GATC	4 cut(s)	99, 320, 418, 447
MboII	GAAGA	1 cut(s)	156
MluCI	AATT	2 cut(s)	237, 273
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	304, 307, 391, 427, 456
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	181, 290
NdeII	GATC	4 cut(s)	99, 320, 418, 447
NlaIII	CATG	4 cut(s)	135, 343, 350, 471
NmeAIII	GCCGAG	2 cut(s)	457, 463
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	292, 352
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	2 cut(s)	251, 369
PspGI	CCWGG	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	372
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	291, 351
Sau3AI	GATC	4 cut(s)	99, 320, 418, 447
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	3 cut(s)	35, 94, 371
SfaNI	GCATC	2 cut(s)	379, 387
SfuI	TTCGAA	1 cut(s)	231
Sse9I	AATT	2 cut(s)	237, 273
SsiI	CCGC	3 cut(s)	175, 291, 384
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	268
TaqI	TCGA	5 cut(s)	37, 231, 319, 421, 450
TasI	AATT	2 cut(s)	237, 273
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	231, 335
XapI	RAATTY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.