Rmu_sc0001601.1_g000007

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001601.1
N/A
Physical Location & Seq
Reverse (-)
38976 .. 41645
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
atggctgcaccacccgccagagctcgcgccgattacgattacctcataaagctcctcctcatcggcgacagcggtgttggtaagagttgccttctcttgcgtttctctgatgggtcctttacaactagttttattacaaccatcggtattgatttcaagataaggaccatagagcttgatgggaaacgaattaaattgcaaatttgggatactgctggtcaagaacgatttcgaacaattacaactgcacttgctgatgaatatggcatcaaattctttgagacaagtgcaaagacaaatctgaatgtggaggaggtcttcttttcaatagctagggatatcaagcaaagacttgctgatactgactcgaaggctgagcctcagacaatcaggatcaaccaaccagaccagggagccggtgctgctcaagctgctcaaaaatcagcttgctgtggttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

153

Amino Acids

16.79

Weight (kDa)

7.65

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 16 - 80 4.7e-06 ADP-ribosylation factor family
Ras PF00071 17 - 83 2.3e-27 Ras family
Roc PF08477 17 - 103 9.6e-21 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 83 - 115 1e-06 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 15, 72
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 201, 272
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 2 cut(s) 157, 327
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 6 cut(s) 23, 52, 175, 332, 431, 446
AluI AGCT 6 cut(s) 23, 52, 175, 332, 431, 446
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 5, 422, 431
ApoI RAATTY 2 cut(s) 201, 272
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 114, 165
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 114, 165
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 409, 418
BccI CCATC 3 cut(s) 104, 149, 173
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 126, 333
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 3 cut(s) 6, 423, 432
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 7, 424, 433
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 2 cut(s) 114, 165
BmgT120I GGNCC 2 cut(s) 114, 165
BmiI GGNNCC 2 cut(s) 115, 415
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 310
Bpu1102I GCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 416
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 366, 395
BseRI GAGGAG 3 cut(s) 44, 47, 326
BseXI GCAGC 2 cut(s) 409, 418
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 393
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 2 cut(s) 15, 72
BspCNI CTCAG 2 cut(s) 367, 394
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 115, 415
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 25, 448
BstDEI CTNAG 2 cut(s) 375, 381
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 4 cut(s) 14, 422, 428, 431
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 409, 418
BstV2I GAAGAC 1 cut(s) 310
BsuI GTATCC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 25, 448
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 114, 165
DdeI CTNAG 2 cut(s) 375, 381
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 114, 165
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 408
EcoRV GATATC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 3 cut(s) 47, 170, 264
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 6, 423, 432
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 6, 423, 432
FspBI CTAG 2 cut(s) 126, 333
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 6, 423, 432
HapII CCGG 1 cut(s) 417
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 417
Hpy188I TCNGA 3 cut(s) 109, 303, 384
Hpy188III TCNNGA 3 cut(s) 157, 221, 391
HpyAV CCTTC 2 cut(s) 101, 364
HpyCH4V TGCA 4 cut(s) 8, 199, 248, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 422, 428, 431
HpyF3I CTNAG 2 cut(s) 375, 381
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 57, 413
LpnPI CCDG 7 cut(s) 31, 201, 376, 395, 417, 422, 430
Lsp1109I GCAGC 2 cut(s) 409, 418
LweI GCATC 1 cut(s) 276
MaeI CTAG 2 cut(s) 126, 333
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 5 cut(s) 189, 194, 201, 237, 272
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 6 cut(s) 53, 65, 68, 304, 307, 390
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 192, 460
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 4 cut(s) 14, 422, 428, 431
NdeII GATC 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 115, 415
NspV TTCGAA 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 7, 424, 433
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 115, 415
PspPI GGNCC 2 cut(s) 114, 165
PspPPI RGGWCCY 1 cut(s) 114
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 192, 460
SatI GCNGC 3 cut(s) 6, 423, 432
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 2 cut(s) 114, 165
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 25
SetI ASST 8 cut(s) 25, 45, 54, 177, 318, 334, 433, 448
SfaNI GCATC 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 2 cut(s) 114, 165
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 5 cut(s) 189, 194, 201, 237, 272
SsiI CCGC 2 cut(s) 15, 72
SspMI CTAG 2 cut(s) 126, 333
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 408
TaqI TCGA 2 cut(s) 232, 368
TasI AATT 5 cut(s) 189, 194, 201, 237, 272
Tru1I TTAA 2 cut(s) 192, 460
Tru9I TTAA 2 cut(s) 192, 460
TseI GCWGC 3 cut(s) 5, 422, 431
TspDTI ATGAA 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 114, 165
XapI RAATTY 2 cut(s) 201, 272
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 126, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.