Rmu_sc0001612.1_g000004

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001612.1
N/A
Physical Location & Seq
Reverse (-)
17740 .. 20667
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
atgccgactagcttggaaaaaagaaagatcgtgacagtgctaagcattgatagaggtggaattaaaggaatcatacccggcacccttcttgcctttcttgaaaccaagcttcaggatttggatggtccgagtgcaagacttgcagattattttgatataattgctggaacaagcacagggggttggtcactaccatgctccggaacaagcacaggggggttggtcactaccatgcttacagctcccaacaaggacaatcgacccatgcaagaagtcattttttcgaaagacattgaaaagaacctggtgacgaggttggggctctcctcgtccacggcgtttgatcaagaagtcaggtcaagggattctccgatgactgcaccccacggtgctggcacgcctgcgcacacgctcagaagagacagtttgcacccatactgggacggcagcgtttctgttgtcagacggaaccaggccacgacttggagcagttcagaagcggctggagtcttcgacgaagggttcgacgttgagcttgatgggcttccatggtttccggcgacctcgctacccaccactgagtttctgatcgccttcgccttcgcagcttgctcgtggtcttctgggccttcgccgcttgctcgaggtcttccgggatgttgtttagagggtgcgtccggcacctgtagtgcagtgatcgccgccttcccgacgccggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

240

Amino Acids

25.37

Weight (kDa)

5.11

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 405
AccB1I GGYRCC 2 cut(s) 80, 680
AccB7I CCANNNNNTGG 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 3 cut(s) 500, 635, 702
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 713
AfiI CCNNNNNNNGG 4 cut(s) 200, 439, 483, 715
AgsI TTSAA 2 cut(s) 101, 296
AjnI CCWGG 2 cut(s) 303, 471
AluBI AGCT 5 cut(s) 12, 109, 242, 535, 608
AluI AGCT 5 cut(s) 12, 109, 242, 535, 608
Alw26I GTCTC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 642
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 2 cut(s) 474, 626
ApeKI GCWGC 2 cut(s) 447, 605
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 125, 626
AsuC2I CCSGG 2 cut(s) 78, 654
AsuHPI GGTGA 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 2 cut(s) 80, 680
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 1 cut(s) 613
BbsI GAAGAC 3 cut(s) 502, 612, 641
BbvI GCAGC 2 cut(s) 459, 617
BccI CCATC 2 cut(s) 116, 533
BceAI ACGGC 2 cut(s) 351, 460
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 2 cut(s) 305, 473
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 2 cut(s) 78, 654
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 685
BisI GCNGC 5 cut(s) 448, 501, 606, 635, 702
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 5 cut(s) 449, 502, 607, 636, 703
Bme1390I CCNGG 4 cut(s) 78, 305, 473, 654
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 125, 626
BmiI GGNNCC 3 cut(s) 82, 470, 682
BmrFI CCNGG 4 cut(s) 78, 305, 473, 654
BmrI ACTGGG 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 3 cut(s) 502, 612, 641
BpmI CTGGAG 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 41
Bpu14I TTCGAA 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 78, 654
BsaHI GRCGYC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 333, 385, 548
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 439, 483, 715
Bse1I ACTGG 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 2 cut(s) 305, 473
BseDI CCNNGG 3 cut(s) 333, 385, 548
BseGI GGATG 2 cut(s) 127, 662
BseLI CCNNNNNNNGG 4 cut(s) 200, 439, 483, 715
BseMII CTCAG 2 cut(s) 427, 570
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 459, 617
BsgI GTGCAG 2 cut(s) 363, 711
BshFI GGCC 2 cut(s) 476, 628
BshNI GGYRCC 2 cut(s) 80, 680
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 6 cut(s) 78, 201, 557, 653, 678, 716
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 4 cut(s) 200, 439, 483, 715
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 2 cut(s) 476, 628
BsoBI CYCGRG 1 cut(s) 642
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 4 cut(s) 27, 343, 588, 696
Bsp1720I GCTNAGC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 3 cut(s) 500, 635, 702
BspANI GGCC 2 cut(s) 476, 628
BspCNI CTCAG 2 cut(s) 426, 571
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 3 cut(s) 82, 470, 682
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 80, 680
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 333, 385, 548
BssMI GATC 4 cut(s) 27, 343, 588, 696
BssNI GRCGYC 1 cut(s) 713
BssSI CACGAG 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 548
Bst2BI CACGAG 1 cut(s) 613
Bst2UI CCWGG 2 cut(s) 305, 473
Bst4CI ACNGT 3 cut(s) 37, 389, 425
Bst6I CTCTTC 1 cut(s) 412
BstACI GRCGYC 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 5 cut(s) 394, 398, 402, 610, 639
BstDEI CTNAG 3 cut(s) 41, 413, 579
BstDSI CCRYGG 3 cut(s) 333, 385, 548
BstF5I GGATG 2 cut(s) 127, 662
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 4 cut(s) 30, 346, 591, 699
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 4 cut(s) 27, 343, 588, 696
BstMWI GCNNNNNNNGC 5 cut(s) 140, 541, 605, 634, 698
BstNI CCWGG 2 cut(s) 305, 473
BstSCI CCNGG 4 cut(s) 76, 303, 471, 652
BstSFI CTRYAG 1 cut(s) 685
BstV1I GCAGC 2 cut(s) 459, 617
BstV2I GAAGAC 3 cut(s) 502, 612, 641
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 2 cut(s) 476, 628
BtgI CCRYGG 3 cut(s) 333, 385, 548
BtsCI GGATG 2 cut(s) 127, 662
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 3 cut(s) 42, 576, 699
Cac8I GCNNGC 5 cut(s) 394, 398, 402, 610, 639
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 125, 626
CseI GACGC 1 cut(s) 663
CsiI ACCWGGT 1 cut(s) 303
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 4 cut(s) 195, 232, 265, 549
DdeI CTNAG 3 cut(s) 41, 413, 579
DpnI GATC 4 cut(s) 29, 345, 590, 698
DpnII GATC 4 cut(s) 27, 343, 588, 696
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 303, 471
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 4 cut(s) 198, 235, 268, 552
FaiI YATR 7 cut(s) 74, 158, 196, 233, 266, 436, 550
FaqI GGGAC 1 cut(s) 455
FatI CATG 4 cut(s) 194, 231, 264, 548
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 5 cut(s) 448, 501, 606, 635, 702
FokI GGATG 2 cut(s) 134, 669
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 5 cut(s) 448, 501, 606, 635, 702
FspBI CTAG 1 cut(s) 9
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 1 cut(s) 405
GluI GCNGC 5 cut(s) 448, 501, 606, 635, 702
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 2 cut(s) 476, 628
HapII CCGG 6 cut(s) 78, 201, 557, 653, 678, 716
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 713
Hin1II CATG 4 cut(s) 198, 235, 268, 552
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 69, 365, 507
HpaII CCGG 6 cut(s) 78, 201, 557, 653, 678, 716
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 6 cut(s) 129, 372, 416, 464, 496, 588
Hpy188III TCNNGA 6 cut(s) 31, 98, 113, 201, 347, 709
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 3 cut(s) 518, 530, 715
HpyAV CCTTC 6 cut(s) 95, 512, 604, 610, 639, 715
HpyCH4III ACNGT 3 cut(s) 37, 389, 425
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 6 cut(s) 134, 143, 268, 380, 430, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 541, 605, 634, 698
HpyF3I CTNAG 3 cut(s) 41, 413, 579
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 713
Hsp92II CATG 4 cut(s) 198, 235, 268, 552
HspAI GCGC 1 cut(s) 404
Kpn2I TCCGGA 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 27, 343, 588, 696
LmnI GCTCC 3 cut(s) 203, 247, 486
Lsp1109I GCAGC 2 cut(s) 459, 617
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 4 cut(s) 31, 186, 223, 307
MalI GATC 4 cut(s) 29, 345, 590, 698
MboI GATC 4 cut(s) 27, 343, 588, 696
MboII GAAGA 4 cut(s) 429, 502, 612, 641
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 60, 159
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 6 cut(s) 47, 306, 337, 574, 638, 661
MroI TCCGGA 1 cut(s) 200
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 2 cut(s) 193, 230
MspI CCGG 6 cut(s) 78, 201, 557, 653, 678, 716
MspR9I CCNGG 4 cut(s) 78, 305, 473, 654
MvaI CCWGG 2 cut(s) 305, 473
MwoI GCNNNNNNNGC 5 cut(s) 140, 541, 605, 634, 698
NciI CCSGG 2 cut(s) 78, 654
NcoI CCATGG 1 cut(s) 548
NdeII GATC 4 cut(s) 27, 343, 588, 696
NlaIII CATG 4 cut(s) 198, 235, 268, 552
NlaIV GGNNCC 3 cut(s) 82, 470, 682
NmuCI GTSAC 4 cut(s) 31, 186, 223, 307
NsbI TGCGCA 1 cut(s) 405
NspV TTCGAA 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 642
PcsI WCGNNNNNNNCGW 2 cut(s) 335, 522
PfeI GAWTC 2 cut(s) 69, 365
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 652
PkrI GCNGC 5 cut(s) 449, 502, 607, 636, 703
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 303, 471
PspGI CCWGG 2 cut(s) 303, 471
PspN4I GGNNCC 3 cut(s) 82, 470, 682
PspPI GGNCC 2 cut(s) 125, 626
PspXI VCTCGAGB 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 193, 230
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 5 cut(s) 448, 501, 606, 635, 702
Sau3AI GATC 4 cut(s) 27, 343, 588, 696
Sau96I GGNCC 2 cut(s) 125, 626
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 4 cut(s) 78, 305, 473, 654
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 685
Sfr274I CTCGAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 193, 230
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 2 cut(s) 60, 159
SsiI CCGC 3 cut(s) 500, 635, 702
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 4 cut(s) 76, 303, 471, 652
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 3 cut(s) 37, 389, 425
TaiI ACGT 1 cut(s) 531
TaqI TCGA 5 cut(s) 259, 284, 513, 525, 643
TasI AATT 2 cut(s) 60, 159
TauI GCSGC 3 cut(s) 503, 637, 704
TfiI GAWTC 2 cut(s) 69, 365
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 3 cut(s) 42, 583, 699
TseFI GTSAC 4 cut(s) 31, 186, 223, 307
TseI GCWGC 2 cut(s) 447, 605
Tsp45I GTSAC 4 cut(s) 31, 186, 223, 307
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 3 cut(s) 42, 583, 699
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 642
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.