Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001618.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

98254 .. 100510

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgacaatttttggttgggttgaagtcctaaagaagcaacaagagacgaggcaggttgagttgttttcaaaggaggcagactggcagagatgtggtgatgatgatggtaacgatcataagggtattgattgtattgatactataaaagatggtgtagaatatgttgaggataacaatgatgattatagggtgcagattcaagggatctgtctccatctgaaaccgtatgggcagatcgagaacaagaacgtcttcttttggttccagaacctcaaggctcatgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtaggtccattgatctgaactttggttccactggttctactagtactgacagatccattgatctaaattttgggtcacgtgtcggctatggtgctgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttctgagggaggtagcggttatggcggtggctctcgcatttcccttgagctcagcctcaactcctacagagatgtagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

218

Amino Acids

24.56

Weight (kDa)

4.73

Isoelectric Point (pI)

26.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	2 cut(s)	585, 594
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	6 cut(s)	212, 334, 342, 355, 417, 478
AcsI	RAATTY	2 cut(s)	302, 436
AcvI	CACGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	23, 69, 200, 512
AhlI	ACTAGT	2 cut(s)	353, 410
AjnI	CCWGG	1 cut(s)	501
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	1 cut(s)	619
AluI	AGCT	1 cut(s)	619
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	2 cut(s)	38, 215
AlwI	GGATC	6 cut(s)	212, 334, 342, 355, 417, 478
ApoI	RAATTY	2 cut(s)	302, 436
Asp700I	GAANNNNTTC	2 cut(s)	251, 516
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	107, 491, 551
AvaII	GGWCC	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	621
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	244, 569
Bbv12I	GWGCWC	1 cut(s)	621
BccI	CCATC	5 cut(s)	98, 143, 222, 362, 461
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	38, 215
BcuI	ACTAGT	2 cut(s)	353, 410
BfaI	CTAG	2 cut(s)	354, 411
BfmI	CTRYAG	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	620
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	3 cut(s)	263, 349, 397
BmrFI	CCNGG	1 cut(s)	503
BpiI	GAAGAC	2 cut(s)	244, 569
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	257, 635
Bsa29I	ATCGAT	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	86, 406
BseBI	CCWGG	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	564, 634
BseNI	ACTGG	2 cut(s)	86, 406
BseRI	GAGGAG	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	38, 215
BsmBI	CGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp1720I	GCTNAGC	1 cut(s)	620
BspACI	CCGC	2 cut(s)	585, 594
BspCNI	CTCAG	2 cut(s)	565, 633
BspDI	ATCGAT	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	263, 349, 397
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	6 cut(s)	212, 334, 342, 355, 417, 478
BsrI	ACTGG	2 cut(s)	86, 406
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	573, 620, 654
BstMAI	GTCTC	2 cut(s)	38, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	591
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	634
BstV2I	GAAGAC	2 cut(s)	244, 569
BstX2I	RGATCY	4 cut(s)	204, 326, 347, 422
BstYI	RGATCY	4 cut(s)	204, 326, 347, 422
Bsu15I	ATCGAT	1 cut(s)	473
BsuTUI	ATCGAT	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	6 cut(s)	281, 478, 532, 536, 559, 649
CviJI	RGCY	6 cut(s)	278, 456, 600, 619, 624, 653
CviKI_1	RGCY	6 cut(s)	278, 456, 600, 619, 624, 653
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	573, 620, 654
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	619
Eco72I	CACGTG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	6 cut(s)	284, 481, 535, 539, 562, 652
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	6 cut(s)	280, 477, 531, 535, 558, 648
FblI	GTMKAC	1 cut(s)	645
FriOI	GRGCYC	1 cut(s)	621
FspBI	CTAG	2 cut(s)	354, 411
Hin1II	CATG	6 cut(s)	284, 481, 535, 539, 562, 652
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	3 cut(s)	107, 491, 551
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	219, 309, 387, 574
Hpy188III	TCNNGA	4 cut(s)	238, 265, 281, 332
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	3 cut(s)	249, 312, 448
HpyCH4V	TGCA	2 cut(s)	193, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	591
HpyF3I	CTNAG	3 cut(s)	573, 620, 654
HpySE526I	ACGT	3 cut(s)	249, 312, 448
Hsp92II	CATG	6 cut(s)	284, 481, 535, 539, 562, 652
LpnPI	CCDG	6 cut(s)	38, 67, 278, 387, 488, 515
MaeI	CTAG	2 cut(s)	354, 411
MaeII	ACGT	3 cut(s)	249, 312, 448
MaeIII	GTNAC	2 cut(s)	107, 444
MboII	GAAGA	2 cut(s)	244, 574
MflI	RGATCY	4 cut(s)	204, 326, 347, 422
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	4 cut(s)	6, 302, 340, 436
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	2 cut(s)	251, 516
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	591
NlaIII	CATG	6 cut(s)	284, 481, 535, 539, 562, 652
NlaIV	GGNNCC	3 cut(s)	263, 349, 397
NmuCI	GTSAC	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	537
PagI	TCATGA	1 cut(s)	280
PdmI	GAANNNNTTC	2 cut(s)	251, 516
PfeI	GAWTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	263, 349, 397
PspPI	GGNCC	1 cut(s)	375
PsuI	RGATCY	4 cut(s)	204, 326, 347, 422
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	621
Sau96I	GGNCC	1 cut(s)	375
ScaI	AGTACT	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	8 cut(s)	57, 252, 273, 315, 377, 451, 583, 621
SfcI	CTRYAG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	272, 614
SmoI	CTYRAG	2 cut(s)	272, 614
SpeI	ACTAGT	2 cut(s)	353, 410
Sse9I	AATT	4 cut(s)	6, 302, 340, 436
SsiI	CCGC	2 cut(s)	585, 594
SspMI	CTAG	2 cut(s)	354, 411
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	3 cut(s)	252, 315, 451
TaqI	TCGA	3 cut(s)	237, 333, 473
TasI	AATT	4 cut(s)	6, 302, 340, 436
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	2 cut(s)	302, 436
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	2 cut(s)	251, 516
XspI	CTAG	2 cut(s)	354, 411
ZrmI	AGTACT	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.