Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001630.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

177845 .. 178255

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtcatcatcgatccacctctcaccaccttctcttatattcacctcctcctcgcttcaccctcttcttcaccacctcctcctcctctcccccctcctctctcaaatgatcaaccccaaatactccgcctccagtctcgcctcctcgtttttcttcgtttttctgaagggggcgatcgtggtctacataggcctatctccagcgaccttcttcacgcttctagctctgctctttgccgcttaccatgtcctttctgcgctttttgggccgtctgagacccacaaccgccccatgagcttggaggagatgcagcctcttctgccgccggtccagctcagcgagatcaccgtcgaggagctcaagcaatacgacggctccgatcccaagaagcctctgttaggagcattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

136

Amino Acids

14.88

Weight (kDa)

6.26

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	4 cut(s)	126, 237, 286, 323
AclWI	GGATC	2 cut(s)	7, 374
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	224, 297, 334, 358
AluI	AGCT	4 cut(s)	224, 297, 334, 358
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	140, 269
AlwI	GGATC	2 cut(s)	7, 374
AoxI	GGCC	2 cut(s)	190, 266
ApeKI	GCWGC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	266, 328
AsuHPI	GGTGA	5 cut(s)	15, 34, 50, 62, 337
AvaII	GGWCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	253, 388
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	140, 269
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	3 cut(s)	237, 311, 323
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	3 cut(s)	238, 312, 324
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	266, 328
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	115, 183
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	264, 349
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	9 cut(s)	37, 40, 68, 71, 74, 86, 133, 317, 368
BseXI	GCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	192, 268
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	140, 269
BsnI	GGCC	2 cut(s)	192, 268
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	12, 108, 174, 342, 379
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	4 cut(s)	126, 237, 286, 323
BspANI	GGCC	2 cut(s)	192, 268
BspCNI	CTCAG	2 cut(s)	265, 348
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	7, 374
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	5 cut(s)	12, 108, 174, 342, 379
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	69, 321
BstDEI	CTNAG	2 cut(s)	273, 335
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	5 cut(s)	15, 111, 177, 345, 382
BstMAI	GTCTC	2 cut(s)	140, 269
BstMBI	GATC	5 cut(s)	12, 108, 174, 342, 379
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 294, 319, 331
BstV1I	GCAGC	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	192, 268
BsuTUI	ATCGAT	1 cut(s)	11
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	266, 328
ClaI	ATCGAT	1 cut(s)	11
CviAII	CATG	2 cut(s)	245, 292
CviJI	RGCY	9 cut(s)	192, 224, 268, 297, 313, 334, 358, 375, 391
CviKI_1	RGCY	9 cut(s)	192, 224, 268, 297, 313, 334, 358, 375, 391
DdeI	CTNAG	2 cut(s)	273, 335
DpnI	GATC	5 cut(s)	14, 110, 176, 344, 381
DpnII	GATC	5 cut(s)	12, 108, 174, 342, 379
Eam1104I	CTCTTC	2 cut(s)	69, 321
EarI	CTCTTC	2 cut(s)	69, 321
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	2 cut(s)	248, 295
FaiI	YATR	4 cut(s)	38, 188, 246, 293
FatI	CATG	2 cut(s)	244, 291
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	237, 311, 323
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	237, 311, 323
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	237, 311, 323
GsuI	CTGGAG	2 cut(s)	115, 183
HaeIII	GGCC	2 cut(s)	192, 268
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	248, 295
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	5 cut(s)	15, 34, 50, 62, 337
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	165, 274, 379
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	353, 374
HpyAV	CCTTC	3 cut(s)	39, 160, 217
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 294, 319, 331
HpyF3I	CTNAG	2 cut(s)	273, 335
Hsp92II	CATG	2 cut(s)	248, 295
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	12, 108, 174, 342, 379
LmnI	GCTCC	3 cut(s)	355, 380, 401
LpnPI	CCDG	4 cut(s)	145, 213, 339, 344
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	221
MalI	GATC	5 cut(s)	14, 110, 176, 344, 381
MboI	GATC	5 cut(s)	12, 108, 174, 342, 379
MboII	GAAGA	5 cut(s)	56, 59, 145, 202, 308
MhlI	GDGCHC	1 cut(s)	360
MseI	TTAA	1 cut(s)	409
MspI	CCGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	265, 294, 319, 331
NdeII	GATC	5 cut(s)	12, 108, 174, 342, 379
NlaIII	CATG	2 cut(s)	248, 295
NlaIV	GGNNCC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	238, 312, 324
Ple19I	CGATCG	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	266, 328
PvuI	CGATCG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	3 cut(s)	237, 311, 323
Sau3AI	GATC	5 cut(s)	12, 108, 174, 342, 379
Sau96I	GGNCC	2 cut(s)	266, 328
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	9 cut(s)	21, 31, 47, 78, 209, 226, 299, 336, 360
SfaNI	GCATC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	4 cut(s)	126, 237, 286, 323
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	11, 351
TauI	GCSGC	2 cut(s)	239, 325
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.