Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001631.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

94316 .. 94633

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtgggtctcaaagctcaagaacatgagatggtccgccatggttttgggcactgccaattccctggtgctcattgtgggtatctattttctggtcttggctttcccttcttgtgatcgcggcctcctcgtaatgcttgtggctgttcctttcttggctgctctccgcattgccaccatggtcaagactggttcagcccaacaagccactgccaagaccgttcttgaggaatctccagctgatacccttgatgttctagaagatgcttctcgacccgaaaccagggtaacgcacttttgtgagtcattctatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0007275 GO:0007399 GO:0007405 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009987 GO:0016020 GO:0019369 GO:0019752 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044464 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0061351 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072089 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

5.77

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7358	PF24057	6 - 97	1.3e-18	Domain of unknown function (DUF7358)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	36, 120, 166
AfiI	CCNNNNNNNGG	1 cut(s)	282
AjnI	CCWGG	2 cut(s)	63, 281
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	16, 239
AluI	AGCT	2 cut(s)	16, 239
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	65, 283
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	2 cut(s)	121, 159
BlsI	GCNGC	2 cut(s)	122, 160
Bme1390I	CCNGG	2 cut(s)	65, 283
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	65, 283
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	4 cut(s)	39, 63, 177, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	65, 283
BseDI	CCNNGG	4 cut(s)	39, 63, 177, 282
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	53, 72
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	2 cut(s)	39, 177
BspACI	CCGC	3 cut(s)	36, 120, 166
BspANI	GGCC	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	4 cut(s)	39, 63, 177, 282
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	39, 177
Bst2UI	CCWGG	2 cut(s)	65, 283
Bst4CI	ACNGT	1 cut(s)	220
BstDSI	CCRYGG	2 cut(s)	39, 177
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	65, 283
BstSCI	CCNGG	2 cut(s)	63, 281
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	145
BstXI	CCANNNNNNTGG	2 cut(s)	46, 64
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	2 cut(s)	39, 177
BtsI	GCAGTG	2 cut(s)	51, 207
BtsIMutI	CAGTG	2 cut(s)	51, 207
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	3 cut(s)	25, 40, 178
CviJI	RGCY	8 cut(s)	16, 101, 123, 143, 158, 197, 206, 239
CviKI_1	RGCY	8 cut(s)	16, 101, 123, 143, 158, 197, 206, 239
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	39, 177
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	63, 281
EcoT14I	CCWWGG	2 cut(s)	39, 177
ErhI	CCWWGG	2 cut(s)	39, 177
FaeI	CATG	3 cut(s)	28, 43, 181
FaiI	YATR	4 cut(s)	26, 41, 179, 312
FatI	CATG	3 cut(s)	24, 39, 177
Fnu4HI	GCNGC	2 cut(s)	121, 159
Fsp4HI	GCNGC	2 cut(s)	121, 159
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	2 cut(s)	121, 159
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	28, 43, 181
HinfI	GANTC	2 cut(s)	230, 302
Hpy188III	TCNNGA	5 cut(s)	19, 184, 224, 257, 270
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	28, 43, 181
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	50, 77, 77, 174, 249, 268, 295
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	53, 72
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	134, 137, 220
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	65, 283
MvaI	CCWGG	2 cut(s)	65, 283
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	203
NcoI	CCATGG	2 cut(s)	39, 177
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	28, 43, 181
OliI	CACNNNNGTG	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	122, 160
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	63, 281
PspGI	CCWGG	2 cut(s)	63, 281
PspPI	GGNCC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	2 cut(s)	121, 159
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	65, 283
SduI	GDGCHC	2 cut(s)	53, 72
SetI	ASST	2 cut(s)	18, 241
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	17, 224
SmoI	CTYRAG	2 cut(s)	17, 224
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	3 cut(s)	36, 120, 166
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	63, 281
StyI	CCWWGG	2 cut(s)	39, 177
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	2 cut(s)	58, 214
TseI	GCWGC	1 cut(s)	158
TspRI	CASTG	2 cut(s)	58, 214
VpaK11BI	GGWCC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	256
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.