Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001659.1

Orthogroup ID

OG0023076

Physical Location & Seq

Genomic Coordinates Reverse (-)

51869 .. 52819

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgttcgtgaagaggaggcaattttataagaaggttgggaaggcttggaaaagaggttatttgttattatgtccacctggtattggaaaatctagcttgattgctgccatggctaattatctccagtttgatatacatgatttagagctttctggtattcgtgacaactctgacttgagatgggtgttgttgtctactacaaatcgttctattctggttgttgaggacattgattgcagtgtgaaaataaaaaatcgggattcagctcagccttccaaaccctctaatagcctagatttagatggtctatggtcatcttgcggcgatgagagaataattgtgttcaccaccaaccacaaggagaaactagaccctgcattgatgcgtccaggtcgaatggatgtgcacattcacttttcatattgcactccaagtgggttcagaaccttgggctctaactaccttggcattcatgaaaccaacactcatcacctctgtggagaaattgaaggcttaatagagagtgcagaggtcacccctgcagttgtagccaaggagcttatgaagagtaatgataccgatgttgttcttgattggctcgtcaagttcctcaaagaaaagaaggtcaagaatgataaagagaagttaaaaaaggctaaaaaagtcgatgaggaagggactaagaaagcagagaagcaggaaagggaggaggatacaaacaaaaactgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

243

Amino Acids

27.61

Weight (kDa)

8.61

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	21 - 141	1.3e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	142 - 213	6.5e-19	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023076)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001659.1_g000012
rosa_rugosa	Rorug02G0092100
rosa_samantha	Rh2CG145700 Rh2DG145200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	76, 388
AleI	CACNNNNGTG	1 cut(s)	495
AluBI	AGCT	4 cut(s)	96, 148, 266, 559
AluI	AGCT	4 cut(s)	96, 148, 266, 559
Alw21I	GWGCWC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	404
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	337, 482, 526
BaeGI	GKGCMC	1 cut(s)	408
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BanII	GRGCYC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	174, 296
BciT130I	CCWGG	2 cut(s)	78, 390
BciVI	GTATCC	1 cut(s)	706
BfaI	CTAG	4 cut(s)	93, 293, 368, 730
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	2 cut(s)	105, 322
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	106, 323
Bme1390I	CCNGG	2 cut(s)	78, 390
BmrFI	CCNGG	2 cut(s)	78, 390
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	4 cut(s)	108, 447, 463, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	78, 390
BseDI	CCNNGG	4 cut(s)	108, 447, 463, 552
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	28, 722
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	408, 455
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	4 cut(s)	108, 447, 463, 552
BssT1I	CCWWGG	4 cut(s)	108, 447, 463, 552
Bst2UI	CCWGG	2 cut(s)	78, 390
Bst6I	CTCTTC	2 cut(s)	5, 560
BstDEI	CTNAG	2 cut(s)	267, 681
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 548
BstNI	CCWGG	2 cut(s)	78, 390
BstPI	GGTNACC	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	76, 388
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	706
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	472
CseI	GACGC	1 cut(s)	374
CsiI	ACCWGGT	1 cut(s)	76
CviAII	CATG	3 cut(s)	109, 137, 473
DdeI	CTNAG	2 cut(s)	267, 681
Eam1104I	CTCTTC	2 cut(s)	5, 560
EarI	CTCTTC	2 cut(s)	5, 560
Eco130I	CCWWGG	4 cut(s)	108, 447, 463, 552
Eco24I	GRGCYC	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	76, 388
EcoT14I	CCWWGG	4 cut(s)	108, 447, 463, 552
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	4 cut(s)	108, 447, 463, 552
FaeI	CATG	3 cut(s)	112, 140, 476
FaiI	YATR	9 cut(s)	27, 70, 110, 134, 138, 310, 421, 474, 563
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	108, 136, 472
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	105, 322
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	105, 322
FspBI	CTAG	4 cut(s)	93, 293, 368, 730
GluI	GCNGC	2 cut(s)	105, 322
GsuI	CTGGAG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	112, 140, 476
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	3 cut(s)	337, 482, 526
Hpy166II	GTNNAC	4 cut(s)	74, 195, 345, 406
Hpy188I	TCNGA	2 cut(s)	172, 443
Hpy188III	TCNNGA	6 cut(s)	7, 161, 257, 473, 590, 628
Hpy8I	GTNNAC	4 cut(s)	74, 195, 345, 406
HpyAV	CCTTC	6 cut(s)	25, 34, 282, 503, 616, 668
HpyCH4V	TGCA	6 cut(s)	237, 377, 406, 426, 527, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 548
HpyF3I	CTNAG	2 cut(s)	267, 681
Hsp92II	CATG	3 cut(s)	112, 140, 476
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	372
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	4 cut(s)	93, 293, 368, 730
MaeIII	GTNAC	2 cut(s)	161, 532
MboII	GAAGA	2 cut(s)	22, 577
MhlI	GDGCHC	2 cut(s)	408, 455
MluCI	AATT	4 cut(s)	20, 115, 336, 504
MseI	TTAA	2 cut(s)	515, 647
MslI	CAYNNNNRTG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	78, 390
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	78, 390
MwoI	GCNNNNNNNGC	2 cut(s)	110, 548
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	3 cut(s)	112, 140, 476
NmuCI	GTSAC	2 cut(s)	161, 532
OliI	CACNNNNGTG	1 cut(s)	495
PagI	TCATGA	1 cut(s)	472
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	106, 323
PsiI	TTATAA	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	76, 388
PspEI	GGTNACC	1 cut(s)	532
PspGI	CCWGG	2 cut(s)	76, 388
PstI	CTGCAG	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	515, 647
SatI	GCNGC	2 cut(s)	105, 322
ScrFI	CCNGG	2 cut(s)	78, 390
SduI	GDGCHC	2 cut(s)	408, 455
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	4 cut(s)	20, 115, 336, 504
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	4 cut(s)	93, 293, 368, 730
StyD4I	CCNGG	2 cut(s)	76, 388
StyI	CCWWGG	4 cut(s)	108, 447, 463, 552
TaqI	TCGA	2 cut(s)	394, 666
TasI	AATT	4 cut(s)	20, 115, 336, 504
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	515, 647
Tru9I	TTAA	2 cut(s)	515, 647
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	161, 532
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	161, 532
TspDTI	ATGAA	4 cut(s)	408, 461, 489, 578
TspRI	CASTG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	4 cut(s)	93, 293, 368, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.