Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001663.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39770 .. 41466

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcatcagcggccttcaggaagggacttctcaagggaccattcctctatcacctcaactacagtcatcccaatgcgacgtggcgagcagcagcgtctcagtgccgtgacctagacaaaacgatggcatcagcggccttcaggaagggacttctcaagggaccattcctctatcacctcaactatagtcatcccaatgctacttaccaggaaaccgctaacaagaccccctcagcaccgccaactgacaagaaaagggagtggcagcaaggccaccaccagaacaagcggcagaaggaccagcattacaacaggggaaaccgcccaacccagggggataacctcaacaagttggcagaatcctcgcagcggtatgcgccgctggggtcggattacatgcgactggttattggcactagtccatgcatggcggaggttgtctgcatctcagacaaacaccctgaacggacagtccgcatgggcgcccagttagatccagacgtggaggcagatcttactcaattcctacgtgataacgccgccatttttgcatggtcctatgcggacatgccaggtatctcccctgaggttatcactcataagctaaccatcaaaccctccttctgtcccatcaagcagaagcggaaggcctttgatgaggaaaaatatcgggcaatcggagaggaggtcgccaaactacagaacattggattcatccgccaagtcgtctatccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

245

Amino Acids

27.81

Weight (kDa)

9.48

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	331, 332, 369
AhlI	ACTAGT	1 cut(s)	416
AjiI	CACGTC	2 cut(s)	81, 502
AjnI	CCWGG	3 cut(s)	207, 330, 571
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	4 cut(s)	12, 135, 271, 648
ApeKI	GCWGC	4 cut(s)	89, 92, 265, 367
AspLEI	GCGC	2 cut(s)	379, 485
AspS9I	GGNCC	4 cut(s)	38, 161, 298, 555
AsuHPI	GGTGA	2 cut(s)	44, 167
AvaII	GGWCC	4 cut(s)	38, 161, 298, 555
AxyI	CCTNAGG	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	101, 104, 277, 379
BccI	CCATC	3 cut(s)	118, 617, 638
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	3 cut(s)	209, 332, 573
BcoDI	GTCTC	1 cut(s)	102
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	113, 417, 736
BfmI	CTRYAG	3 cut(s)	61, 184, 698
BfoI	RGCGCY	1 cut(s)	486
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	9 cut(s)	12, 90, 93, 135, 266, 290, 368, 380, 540
BlsI	GCNGC	9 cut(s)	13, 91, 94, 136, 267, 291, 369, 381, 541
Bme1390I	CCNGG	3 cut(s)	209, 332, 573
Bme18I	GGWCC	4 cut(s)	38, 161, 298, 555
BmgBI	CACGTC	2 cut(s)	81, 502
BmgT120I	GGNCC	4 cut(s)	38, 161, 298, 555
BmiI	GGNNCC	3 cut(s)	39, 162, 484
BmrFI	CCNGG	3 cut(s)	209, 332, 573
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	14, 137, 453
BmuI	ACTGGG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	2 cut(s)	17, 140
BsaAI	YACGTR	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	330, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 332, 369
Bse1I	ACTGG	2 cut(s)	408, 487
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	209, 332, 573
BseDI	CCNNGG	2 cut(s)	330, 331
BseGI	GGATG	3 cut(s)	67, 190, 714
BseLI	CCNNNNNNNGG	3 cut(s)	331, 332, 369
BseMII	CTCAG	4 cut(s)	113, 246, 462, 576
BseNI	ACTGG	2 cut(s)	408, 487
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	101, 104, 277, 379
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	4 cut(s)	14, 137, 273, 650
BshNI	GGYRCC	1 cut(s)	482
BslFI	GGGAC	5 cut(s)	39, 51, 162, 174, 612
BslI	CCNNNNNNNGG	3 cut(s)	331, 332, 369
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	5 cut(s)	39, 51, 162, 174, 612
BsnI	GGCC	4 cut(s)	14, 137, 273, 650
Bsp143I	GATC	2 cut(s)	493, 511
BspANI	GGCC	4 cut(s)	14, 137, 273, 650
BspCNI	CTCAG	4 cut(s)	112, 245, 461, 577
BspLI	GGNNCC	3 cut(s)	39, 162, 484
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	408, 487
BssECI	CCNNGG	2 cut(s)	330, 331
BssMI	GATC	2 cut(s)	493, 511
BssNI	GRCGYC	1 cut(s)	483
Bst2UI	CCWGG	3 cut(s)	209, 332, 573
Bst4CI	ACNGT	2 cut(s)	65, 472
BstACI	GRCGYC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	99, 232, 448, 585
BstF5I	GGATG	3 cut(s)	67, 190, 714
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	379, 485
BstKTI	GATC	2 cut(s)	496, 514
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	493, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 134, 376, 548
BstNI	CCWGG	3 cut(s)	209, 332, 573
BstNSI	RCATGY	2 cut(s)	400, 571
BstSCI	CCNGG	3 cut(s)	207, 330, 571
BstSFI	CTRYAG	3 cut(s)	61, 184, 698
BstV1I	GCAGC	4 cut(s)	101, 104, 277, 379
BstX2I	RGATCY	2 cut(s)	493, 511
BstYI	RGATCY	2 cut(s)	493, 511
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	4 cut(s)	14, 137, 273, 650
BtrI	CACGTC	2 cut(s)	81, 502
BtsCI	GGATG	3 cut(s)	67, 190, 714
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	379, 485
Cfr13I	GGNCC	4 cut(s)	38, 161, 298, 555
CseI	GACGC	1 cut(s)	84
CviAII	CATG	6 cut(s)	397, 423, 427, 478, 552, 568
CviJI	RGCY	5 cut(s)	14, 137, 273, 604, 650
CviKI_1	RGCY	5 cut(s)	14, 137, 273, 604, 650
DdeI	CTNAG	4 cut(s)	99, 232, 448, 585
DinI	GGCGCC	1 cut(s)	484
DpnI	GATC	2 cut(s)	495, 513
DpnII	GATC	2 cut(s)	493, 511
EciI	GGCGGA	2 cut(s)	446, 707
Eco147I	AGGCCT	1 cut(s)	650
Eco47I	GGWCC	4 cut(s)	38, 161, 298, 555
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	585
EcoRII	CCWGG	3 cut(s)	207, 330, 571
EcoT22I	ATGCAT	1 cut(s)	428
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	6 cut(s)	400, 426, 430, 481, 555, 571
FaqI	GGGAC	5 cut(s)	39, 51, 162, 174, 612
FatI	CATG	6 cut(s)	396, 422, 426, 477, 551, 567
Fnu4HI	GCNGC	9 cut(s)	12, 90, 93, 135, 266, 290, 368, 380, 540
FokI	GGATG	3 cut(s)	54, 177, 701
Fsp4HI	GCNGC	9 cut(s)	12, 90, 93, 135, 266, 290, 368, 380, 540
FspBI	CTAG	3 cut(s)	113, 417, 736
GlaI	GCGC	2 cut(s)	378, 484
GluI	GCNGC	9 cut(s)	12, 90, 93, 135, 266, 290, 368, 380, 540
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	14, 137, 273, 650
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	2 cut(s)	379, 485
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	400, 426, 430, 481, 555, 571
Hin6I	GCGC	2 cut(s)	377, 483
HinP1I	GCGC	2 cut(s)	377, 483
HinfI	GANTC	2 cut(s)	359, 711
HphI	GGTGA	2 cut(s)	44, 167
Hpy188I	TCNGA	3 cut(s)	391, 451, 680
Hpy188III	TCNNGA	3 cut(s)	19, 142, 497
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	7 cut(s)	16, 25, 139, 148, 289, 631, 640
HpyCH4III	ACNGT	2 cut(s)	65, 472
HpyCH4IV	ACGT	3 cut(s)	80, 501, 529
HpyCH4V	TGCA	3 cut(s)	426, 444, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 134, 376, 548
HpyF3I	CTNAG	4 cut(s)	99, 232, 448, 585
HpySE526I	ACGT	3 cut(s)	80, 501, 529
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	6 cut(s)	400, 426, 430, 481, 555, 571
HspAI	GCGC	2 cut(s)	377, 483
KasI	GGCGCC	1 cut(s)	482
Kzo9I	GATC	2 cut(s)	493, 511
Lsp1109I	GCAGC	4 cut(s)	101, 104, 277, 379
LweI	GCATC	3 cut(s)	14, 137, 453
MaeI	CTAG	3 cut(s)	113, 417, 736
MaeII	ACGT	3 cut(s)	80, 501, 529
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	495, 513
MboI	GATC	2 cut(s)	493, 511
MflI	RGATCY	2 cut(s)	493, 511
MluCI	AATT	1 cut(s)	521
Mly113I	GGCGCC	1 cut(s)	483
MmeI	TCCRAC	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	428
MslI	CAYNNNNRTG	2 cut(s)	72, 195
MspA1I	CMGCKG	4 cut(s)	11, 134, 370, 382
MspR9I	CCNGG	3 cut(s)	209, 332, 573
MvaI	CCWGG	3 cut(s)	209, 332, 573
MwoI	GCNNNNNNNGC	4 cut(s)	11, 134, 376, 548
NarI	GGCGCC	1 cut(s)	483
NdeII	GATC	2 cut(s)	493, 511
NlaIII	CATG	6 cut(s)	400, 426, 430, 481, 555, 571
NlaIV	GGNNCC	3 cut(s)	39, 162, 484
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	2 cut(s)	400, 571
PasI	CCCWGGG	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	650
PfeI	GAWTC	2 cut(s)	359, 711
PkrI	GCNGC	9 cut(s)	13, 91, 94, 136, 267, 291, 369, 381, 541
PluTI	GGCGCC	1 cut(s)	486
Ppu21I	YACGTR	1 cut(s)	530
Psp6I	CCWGG	3 cut(s)	207, 330, 571
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	3 cut(s)	207, 330, 571
PspN4I	GGNNCC	3 cut(s)	39, 162, 484
PspPI	GGNCC	4 cut(s)	38, 161, 298, 555
PsuI	RGATCY	2 cut(s)	493, 511
RseI	CAYNNNNRTG	2 cut(s)	72, 195
SatI	GCNGC	9 cut(s)	12, 90, 93, 135, 266, 290, 368, 380, 540
Sau3AI	GATC	2 cut(s)	493, 511
Sau96I	GGNCC	4 cut(s)	38, 161, 298, 555
ScrFI	CCNGG	3 cut(s)	209, 332, 573
SfaNI	GCATC	3 cut(s)	14, 137, 453
SfcI	CTRYAG	3 cut(s)	61, 184, 698
SfoI	GGCGCC	1 cut(s)	484
SinI	GGWCC	4 cut(s)	38, 161, 298, 555
SmiMI	CAYNNNNRTG	2 cut(s)	72, 195
SmlI	CTYRAG	2 cut(s)	32, 155
SmoI	CTYRAG	2 cut(s)	32, 155
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	650
SspDI	GGCGCC	1 cut(s)	482
SspMI	CTAG	3 cut(s)	113, 417, 736
StuI	AGGCCT	1 cut(s)	650
StyD4I	CCNGG	3 cut(s)	207, 330, 571
TaaI	ACNGT	2 cut(s)	65, 472
TaiI	ACGT	3 cut(s)	83, 504, 532
TasI	AATT	1 cut(s)	521
TauI	GCSGC	5 cut(s)	14, 137, 292, 382, 542
TfiI	GAWTC	2 cut(s)	359, 711
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	4 cut(s)	89, 92, 265, 367
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	4 cut(s)	38, 161, 298, 555
XceI	RCATGY	2 cut(s)	400, 571
XspI	CTAG	3 cut(s)	113, 417, 736
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.