Rmu_sc0001694.1_g000012

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001694.1
N/A
Physical Location & Seq
Reverse (-)
84398 .. 86915
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
atgggtctgtttgataaggagggtacttggaaggaagatgatcagggtgtggaacagattgtgtctgactattttcaagagatgtttacggcttctgaggttgatttagaagctttggataagactttggaggttattcggccttttgtgacaccagccatgaatgttgagcttactcgtccttatagtgaggaagacgtgaaacttgccttgtttcagatgtaccccaccaagtctccgaggcctgatgggatgcctcctttatttttttcaggaaaacatcagggaaatgttatcccttctaggggactgagacaaggtgacccgttatcaccctacctgtttctgttggggcagaaggtttatttgtgttgcttcttcaaagtgctagagctgggcaactaccaggaatatcagtatgtgagaatgctcctgcacttgatcatttactttttgctgattatagtcttctctatgtggaggcgtcaagtcaggcttgtttggagattcaacggattctgggtatctatgggaaggcttctggctccgctaaatcctcaagtgcatcaggttagtgatttaattactgacaagcaatgggatgtcaatctggtcgatcagacttttcaagctgaagatcgctctttgattctttccatccctttgagtttaaggaatgtggtggataggcggatatcgatttatgattctaagggaaagttcacagtgaagagtgcttatagagtgctagtttcaggatttaataaaccgcatgagcggtatgcgaatgtctctgcaatcctttgggagaaactgtggaaaatgaagatgcctgcctctactaagggagtttggagggagcgtaatttgagagtttggaatggtaagagcactacaattggggatttggtgtttggactgatgcccgattgtgtgactatcgttttcataatcataccccacaactggatgagggggagggaaaagtacatggttggaaagctccctctgatggatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

340

Amino Acids

39.63

Weight (kDa)

9.06

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 778
AciI CCGC 4 cut(s) 548, 691, 770, 778
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 3 cut(s) 25, 224, 989
AfiI CCNNNNNNNGG 4 cut(s) 304, 305, 966, 1012
AgsI TTSAA 4 cut(s) 77, 382, 511, 629
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 5 cut(s) 113, 172, 394, 632, 1003
AluI AGCT 5 cut(s) 113, 172, 394, 632, 1003
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 3 cut(s) 240, 307, 796
AoxI GGCC 2 cut(s) 140, 242
AsuHPI GGTGA 2 cut(s) 324, 332
BbsI GAAGAC 2 cut(s) 201, 460
Bbv12I GWGCWC 1 cut(s) 893
BccI CCATC 4 cut(s) 242, 665, 1006, 1010
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 407
BclI TGATCA 2 cut(s) 40, 441
BcoDI GTCTC 3 cut(s) 240, 307, 796
BfaI CTAG 3 cut(s) 303, 389, 749
Bme1390I CCNGG 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 4 cut(s) 243, 574, 819, 912
BpiI GAAGAC 2 cut(s) 201, 460
BpuEI CTTGAG 1 cut(s) 543
Bsa29I ATCGAT 1 cut(s) 698
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 6 cut(s) 220, 250, 800, 830, 847, 877
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 305, 966, 1012
Bse1I ACTGG 1 cut(s) 971
Bse3DI GCAATG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 1 cut(s) 698
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 5 cut(s) 258, 607, 657, 975, 1021
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 304, 305, 966, 1012
BseMI GCAATG 1 cut(s) 602
BseMII CTCAG 2 cut(s) 87, 302
BseNI ACTGG 1 cut(s) 971
BseYI CCCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 142, 244
BshVI ATCGAT 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 893
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 4 cut(s) 304, 305, 966, 1012
BsmAI GTCTC 3 cut(s) 240, 307, 796
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 2 cut(s) 142, 244
Bsp1286I GDGCHC 1 cut(s) 893
Bsp143I GATC 4 cut(s) 40, 441, 616, 637
BspACI CCGC 4 cut(s) 548, 691, 770, 778
BspANI GGCC 2 cut(s) 142, 244
BspCNI CTCAG 2 cut(s) 88, 303
BspDI ATCGAT 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 602
BsrI ACTGG 1 cut(s) 971
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 4 cut(s) 40, 441, 616, 637
BssNI GRCGYC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 727, 816
Bst6I CTCTTC 1 cut(s) 725
BstACI GRCGYC 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 96, 311, 711, 843
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 5 cut(s) 258, 607, 657, 975, 1021
BstKTI GATC 4 cut(s) 43, 444, 619, 640
BstMAI GTCTC 3 cut(s) 240, 307, 796
BstMBI GATC 4 cut(s) 40, 441, 616, 637
BstNI CCWGG 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 405
BstV2I GAAGAC 2 cut(s) 201, 460
Bsu15I ATCGAT 1 cut(s) 698
BsuRI GGCC 2 cut(s) 142, 244
BsuTUI ATCGAT 1 cut(s) 698
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 5 cut(s) 258, 607, 657, 975, 1021
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 1 cut(s) 834
ClaI ATCGAT 1 cut(s) 698
CseI GACGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 24, 223, 988
CviAII CATG 3 cut(s) 160, 773, 991
CviQI GTAC 3 cut(s) 24, 223, 988
DdeI CTNAG 4 cut(s) 96, 311, 711, 843
DpnI GATC 4 cut(s) 42, 443, 618, 639
DpnII GATC 4 cut(s) 40, 441, 616, 637
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
EciI GGCGGA 1 cut(s) 706
Eco147I AGGCCT 1 cut(s) 244
Eco32I GATATC 1 cut(s) 696
Eco57I CTGAAG 1 cut(s) 654
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 696
FaeI CATG 3 cut(s) 163, 776, 994
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 1 cut(s) 321
FatI CATG 3 cut(s) 159, 772, 990
FbaI TGATCA 2 cut(s) 40, 441
FokI GGATG 4 cut(s) 265, 614, 644, 982
FspBI CTAG 3 cut(s) 303, 389, 749
GsaI CCCAGC 1 cut(s) 398
HaeIII GGCC 2 cut(s) 142, 244
HgaI GACGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 3 cut(s) 163, 776, 994
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 4 cut(s) 507, 516, 649, 707
HphI GGTGA 2 cut(s) 324, 332
Hpy166II GTNNAC 2 cut(s) 87, 723
Hpy188I TCNGA 6 cut(s) 67, 97, 219, 240, 621, 1011
Hpy188III TCNNGA 3 cut(s) 77, 273, 756
Hpy8I GTNNAC 2 cut(s) 87, 723
HpyAV CCTTC 4 cut(s) 25, 309, 352, 528
HpyCH4III ACNGT 2 cut(s) 727, 816
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 436, 565, 797
HpyF3I CTNAG 4 cut(s) 96, 311, 711, 843
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 3 cut(s) 163, 776, 994
Ksp22I TGATCA 2 cut(s) 40, 441
Kzo9I GATC 4 cut(s) 40, 441, 616, 637
LmnI GCTCC 4 cut(s) 435, 550, 859, 1008
LweI GCATC 4 cut(s) 243, 574, 819, 912
MaeI CTAG 3 cut(s) 303, 389, 749
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 148, 320, 934
MalI GATC 4 cut(s) 42, 443, 618, 639
MbiI CCGCTC 1 cut(s) 778
MboI GATC 4 cut(s) 40, 441, 616, 637
MboII GAAGA 7 cut(s) 47, 206, 370, 460, 647, 742, 838
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 1 cut(s) 893
MluCI AATT 3 cut(s) 582, 865, 897
MmeI TCCRAC 1 cut(s) 976
MseI TTAA 3 cut(s) 581, 671, 762
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 1 cut(s) 407
NdeII GATC 4 cut(s) 40, 441, 616, 637
NlaIII CATG 3 cut(s) 163, 776, 994
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 3 cut(s) 148, 320, 934
PceI AGGCCT 1 cut(s) 244
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 4 cut(s) 507, 516, 649, 707
Psp6I CCWGG 1 cut(s) 405
PspEI GGTNACC 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 546
RsaI GTAC 3 cut(s) 25, 224, 989
RsaNI GTAC 3 cut(s) 24, 223, 988
SaqAI TTAA 3 cut(s) 581, 671, 762
Sau3AI GATC 4 cut(s) 40, 441, 616, 637
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 4 cut(s) 243, 574, 819, 912
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
Sse9I AATT 3 cut(s) 582, 865, 897
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 4 cut(s) 548, 691, 770, 778
SspMI CTAG 3 cut(s) 303, 389, 749
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 727, 816
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 615, 698
TasI AATT 3 cut(s) 582, 865, 897
TatI WGTACW 1 cut(s) 987
TfiI GAWTC 4 cut(s) 507, 516, 649, 707
Tru1I TTAA 3 cut(s) 581, 671, 762
Tru9I TTAA 3 cut(s) 581, 671, 762
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 3 cut(s) 148, 320, 934
Tsp45I GTSAC 3 cut(s) 148, 320, 934
TspDTI ATGAA 3 cut(s) 176, 839, 937
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 1 cut(s) 732
XspI CTAG 3 cut(s) 303, 389, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.