Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001708.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1856 .. 3376

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccggtgccgtcccattggtgaagatttctgtggagactggttattgtggcggatgtgaagttgaattcaggcttgggttctctgcttcaacgaattcaatggcaatccaaatcggccgcgagagagtggaaattgcgaaacatctctctcttcctccagtcaagctacactgcagtatgcttgctgaggatgccatcaaggcagctgttaaagactatcaaacaaagctggctaaatcatcaaatggcagctcagaggcctcacctgtggagaaggctgctaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

112

Amino Acids

11.78

Weight (kDa)

8.51

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	58 - 94	1.8e-08	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	99, 166
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	3 cut(s)	19, 113, 142
AgsI	TTSAA	3 cut(s)	113, 138, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	4 cut(s)	214, 254, 277, 300
AluI	AGCT	4 cut(s)	214, 254, 277, 300
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	163, 306
ApeKI	GCWGC	3 cut(s)	251, 297, 326
ApoI	RAATTY	3 cut(s)	19, 113, 142
AsuHPI	GGTGA	2 cut(s)	79, 303
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	263, 309, 313
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	166, 252, 298, 327
BlsI	GCNGC	4 cut(s)	167, 253, 299, 328
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	91, 206
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	107, 244
BseMII	CTCAG	2 cut(s)	225, 315
BseNI	ACTGG	2 cut(s)	91, 206
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	263, 309, 313
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	165, 308
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	165, 308
Bsp1286I	GDGCHC	1 cut(s)	16
BspACI	CCGC	2 cut(s)	99, 166
BspANI	GGCC	2 cut(s)	165, 308
BspCNI	CTCAG	2 cut(s)	226, 314
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	91, 206
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	231, 279
BstDEI	CTNAG	2 cut(s)	234, 301
BstF5I	GGATG	2 cut(s)	107, 244
BstFNI	CGCG	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	77
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 248, 332
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	263, 309, 313
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	165, 308
BtsCI	GGATG	2 cut(s)	107, 244
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	231, 279
Cfr10I	RCCGGY	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	234, 301
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	163
EcoRI	GAATTC	3 cut(s)	19, 113, 142
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	2 cut(s)	44, 227
FaqI	GGGAC	1 cut(s)	44
Fnu4HI	GCNGC	4 cut(s)	166, 252, 298, 327
FokI	GGATG	2 cut(s)	114, 251
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	166, 252, 298, 327
GluI	GCNGC	4 cut(s)	166, 252, 298, 327
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	165, 308
HapII	CCGG	1 cut(s)	51
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	79, 303
Hpy188I	TCNGA	2 cut(s)	25, 304
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 248, 332
HpyF3I	CTNAG	2 cut(s)	234, 301
LpnPI	CCDG	7 cut(s)	29, 64, 72, 103, 219, 263, 327
Lsp1109I	GCAGC	3 cut(s)	263, 309, 313
LweI	GCATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	82, 191
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	19, 113, 142, 180
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	213, 229, 298, 319
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	239, 248, 332
NlaIV	GGNNCC	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	167, 253, 299, 328
PspN4I	GGNNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	4 cut(s)	166, 252, 298, 327
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	33, 216, 256, 279, 302, 316
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	19, 113, 142, 180
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	2 cut(s)	99, 166
StuI	AGGCCT	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	19, 113, 142, 180
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	3 cut(s)	251, 297, 326
TspRI	CASTG	1 cut(s)	224
XapI	RAATTY	3 cut(s)	19, 113, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.