Rmu_sc0001710.1_g000001

negative regulation of mRNA splicing, via spliceosome

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001710.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 315
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 194 bp
atggccggagtagcccaaccaccgaagagaggattaccaccgcctcctcgccgtcgatttgaccctgtcgatcgcgaaaagacttgccccttattgcttcgagttttcactaaggtatattacccaatacccgtgcctgagttttcttctgggtttctatggaattcgaagtttaagcttgaatttgatcggtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000785 GO:0000790 GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006476 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016580 GO:0016604 GO:0016607 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033119 GO:0033558 GO:0033993 GO:0034641 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043484 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045292 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0070013 GO:0070822 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0098732 GO:0140096 GO:0140110 GO:1901360 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.49

Weight (kDa)

10.12

Isoelectric Point (pI)

73.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 163, 182
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 163, 182
AsuII TTCGAA 1 cut(s) 167
BceAI ACGGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 70, 187
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 167
BssMI GATC 2 cut(s) 70, 187
Bst6I CTCTTC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 111, 138
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 2 cut(s) 73, 190
BstMBI GATC 2 cut(s) 70, 187
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 5
BtuMI TCGCGA 1 cut(s) 75
CviJI RGCY 3 cut(s) 5, 14, 178
CviKI_1 RGCY 3 cut(s) 5, 14, 178
DdeI CTNAG 2 cut(s) 111, 138
DpnI GATC 2 cut(s) 72, 189
DpnII GATC 2 cut(s) 70, 187
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 163
FaiI YATR 2 cut(s) 118, 160
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 176
HpaII CCGG 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 111, 138
Kzo9I GATC 2 cut(s) 70, 187
LpnPI CCDG 4 cut(s) 19, 78, 135, 150
MalI GATC 2 cut(s) 72, 189
MboI GATC 2 cut(s) 70, 187
MboII GAAGA 2 cut(s) 37, 138
MluCI AATT 2 cut(s) 163, 182
MnlI CCTC 3 cut(s) 23, 54, 57
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 70, 187
NruI TCGCGA 1 cut(s) 75
NspV TTCGAA 1 cut(s) 167
PflFI GACNNNGTC 1 cut(s) 65
Ple19I CGATCG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 1 cut(s) 73
RruI TCGCGA 1 cut(s) 75
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 2 cut(s) 70, 187
SetI ASST 2 cut(s) 117, 180
SfuI TTCGAA 1 cut(s) 167
Sse9I AATT 2 cut(s) 163, 182
SsiI CCGC 1 cut(s) 41
TaqI TCGA 4 cut(s) 55, 69, 100, 167
TasI AATT 2 cut(s) 163, 182
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 65
XapI RAATTY 2 cut(s) 163, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.