Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42790 .. 45579

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaacctttgacaagcggagactatccacacagcatgcgatctctcgtcggaaaccgattacccaaattcacaaaagaacaatccaagttactaattggatcatttgattttattggactaaattattataccacttactatgcaacatatacacctcagaacaattctttaaatgcaagctacttgacagacgttcgtgctactcaatcatttgcgctaaatggcgtccccattggtccacaggctgcttcatcatggctatatgtttatccaaaaggaattagagaccttttactctatacaaagacaaagtataatgatccacttatttacattactgagaatggcattgatgagttcaatgatcccaaattatcacttgaggaagccctctatgacactcatagagttgactattacttccgccacctctattaccttcaaaaagcaatcaaggcacccaaggacggcaacccggatacctgcacgcccgacgcactcaactgcaaaaccgtcgacgtgttcgatctgcaccaatttacccaccaaaaccaaaggtaccaagcacatgaggcccaaaaaaatttagaggagagatctggaaccgtcgacgtgttcgatctgcaccaatttacccaccgaaaccaaaggtaccaagcacatgaggcccaaaaaaatttagaggagagatctggatccgccgacccgaaccgatcaacgcgatcctggattcctccccgatctgtcctcgactcgagtgctcctccctacgcaaatctcgccctaccaaggaatctcgccggtattagatcaacaagccaccgaagaaagcctaccaccattctgctcaaaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

286

Amino Acids

32.83

Weight (kDa)

8.63

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	2 - 153	1.7e-26	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
Acc65I	GGTACC	2 cut(s)	561, 654
AccB1I	GGYRCC	3 cut(s)	460, 561, 654
AccI	GTMKAC	2 cut(s)	519, 612
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	18, 427, 702
AclWI	GGATC	6 cut(s)	109, 317, 362, 693, 706, 720
AcsI	RAATTY	3 cut(s)	68, 586, 679
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	2 cut(s)	563, 656
AfiI	CCNNNNNNNGG	2 cut(s)	470, 792
AflIII	ACRYGT	2 cut(s)	522, 615
AgsI	TTSAA	2 cut(s)	364, 446
AjiI	CACGTC	2 cut(s)	523, 616
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	15, 282
AlwI	GGATC	6 cut(s)	109, 317, 362, 693, 706, 720
Ama87I	CYCGRG	1 cut(s)	757
AoxI	GGCC	2 cut(s)	576, 669
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	3 cut(s)	68, 586, 679
Asp718I	GGTACC	2 cut(s)	561, 654
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	239, 577, 670
AsuC2I	CCSGG	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	757
AvaII	GGWCC	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	698
BanI	GGYRCC	3 cut(s)	460, 561, 654
BarI	GAAGNNNNNNTAC	2 cut(s)	820, 852
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	4 cut(s)	499, 533, 743, 777
BciT130I	CCWGG	1 cut(s)	730
BciVI	GTATCC	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	15, 282
BfaI	CTAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	475
BglII	AGATCT	2 cut(s)	599, 692
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	479, 730
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	757
BmgBI	CACGTC	2 cut(s)	523, 616
BmgT120I	GGNCC	3 cut(s)	239, 577, 670
BmiI	GGNNCC	6 cut(s)	6, 462, 563, 607, 656, 700
BmrFI	CCNGG	2 cut(s)	479, 730
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	697
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	465, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 792
Bse118I	RCCGGY	1 cut(s)	803
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	2 cut(s)	465, 791
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	2 cut(s)	470, 792
BseMII	CTCAG	2 cut(s)	173, 333
BseRI	GAGGAG	3 cut(s)	608, 701, 756
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	3 cut(s)	472, 518, 611
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	2 cut(s)	578, 671
BshNI	GGYRCC	3 cut(s)	460, 561, 654
BsiHKAI	GWGCWC	1 cut(s)	766
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	479, 804
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	470, 792
BsmAI	GTCTC	2 cut(s)	15, 282
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	578, 671
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	766
BspACI	CCGC	3 cut(s)	18, 427, 702
BspANI	GGCC	2 cut(s)	578, 671
BspCNI	CTCAG	2 cut(s)	172, 334
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	6 cut(s)	6, 462, 563, 607, 656, 700
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	6 cut(s)	109, 317, 362, 693, 706, 720
BspT107I	GGYRCC	3 cut(s)	460, 561, 654
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	803
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	465, 791
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	465, 791
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	2 cut(s)	517, 610
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	38, 181, 491
BstDEI	CTNAG	2 cut(s)	159, 342
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	15, 282
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 575, 668, 782
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	477, 728
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	3 cut(s)	599, 692, 698
BstYI	RGATCY	3 cut(s)	599, 692, 698
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	578, 671
BtrI	CACGTC	2 cut(s)	523, 616
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	3 cut(s)	38, 181, 491
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	239, 577, 670
CseI	GACGC	2 cut(s)	217, 506
Csp6I	GTAC	2 cut(s)	562, 655
CviAII	CATG	4 cut(s)	37, 258, 572, 665
CviJI	RGCY	8 cut(s)	183, 248, 262, 392, 578, 671, 822, 835
CviKI_1	RGCY	8 cut(s)	183, 248, 262, 392, 578, 671, 822, 835
CviQI	GTAC	2 cut(s)	562, 655
DdeI	CTNAG	2 cut(s)	159, 342
DraI	TTTAAA	1 cut(s)	174
EciI	GGCGGA	2 cut(s)	416, 691
Eco130I	CCWWGG	2 cut(s)	465, 791
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	465, 791
ErhI	CCWWGG	2 cut(s)	465, 791
FaeI	CATG	4 cut(s)	40, 261, 575, 668
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	36, 257, 571, 664
FblI	GTMKAC	2 cut(s)	519, 612
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	859
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	578, 671
HapII	CCGG	2 cut(s)	479, 804
HgaI	GACGC	2 cut(s)	217, 506
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	40, 261, 575, 668
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	3 cut(s)	415, 520, 613
HindII	GTYRAC	3 cut(s)	415, 520, 613
HinfI	GANTC	3 cut(s)	733, 755, 796
HpaII	CCGG	2 cut(s)	479, 804
Hpy166II	GTNNAC	4 cut(s)	242, 415, 520, 613
Hpy188I	TCNGA	2 cut(s)	53, 162
Hpy188III	TCNNGA	2 cut(s)	603, 696
Hpy8I	GTNNAC	4 cut(s)	242, 415, 520, 613
Hpy99I	CGWCG	6 cut(s)	53, 500, 521, 524, 614, 617
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	2 cut(s)	517, 610
HpyCH4IV	ACGT	3 cut(s)	195, 522, 615
HpyCH4V	TGCA	6 cut(s)	146, 179, 489, 510, 535, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 575, 668, 782
HpyF3I	CTNAG	2 cut(s)	159, 342
HpySE526I	ACGT	3 cut(s)	195, 522, 615
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	40, 261, 575, 668
HspAI	GCGC	1 cut(s)	218
KpnI	GGTACC	2 cut(s)	565, 658
LmnI	GCTCC	1 cut(s)	769
LpnPI	CCDG	8 cut(s)	230, 492, 499, 588, 681, 715, 742, 817
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	859
MaeII	ACGT	3 cut(s)	195, 522, 615
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	840
MflI	RGATCY	3 cut(s)	599, 692, 698
MhlI	GDGCHC	1 cut(s)	766
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	31
MseI	TTAA	1 cut(s)	173
MspI	CCGG	2 cut(s)	479, 804
MspR9I	CCNGG	2 cut(s)	479, 730
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	458, 575, 668, 782
NciI	CCSGG	1 cut(s)	479
NlaIII	CATG	4 cut(s)	40, 261, 575, 668
NlaIV	GGNNCC	6 cut(s)	6, 462, 563, 607, 656, 700
NspI	RCATGY	1 cut(s)	40
PaeI	GCATGC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	2 cut(s)	525, 618
PfeI	GAWTC	2 cut(s)	733, 796
PfoI	TCCNGGA	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	6 cut(s)	6, 462, 563, 607, 656, 700
PspPI	GGNCC	3 cut(s)	239, 577, 670
PspXI	VCTCGAGB	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	599, 692, 698
RsaI	GTAC	2 cut(s)	563, 656
RsaNI	GTAC	2 cut(s)	562, 655
SalI	GTCGAC	2 cut(s)	518, 611
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	249
Sau96I	GGNCC	3 cut(s)	239, 577, 670
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	479, 730
SduI	GDGCHC	1 cut(s)	766
Sfr274I	CTCGAG	1 cut(s)	757
SgrDI	CGTCGACG	2 cut(s)	518, 611
SinI	GGWCC	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	757
SmlI	CTYRAG	2 cut(s)	383, 757
SmoI	CTYRAG	2 cut(s)	383, 757
SphI	GCATGC	1 cut(s)	40
SsiI	CCGC	3 cut(s)	18, 427, 702
SspMI	CTAG	1 cut(s)	859
StyD4I	CCNGG	2 cut(s)	477, 728
StyI	CCWWGG	2 cut(s)	465, 791
TaaI	ACNGT	2 cut(s)	517, 610
TaiI	ACGT	3 cut(s)	198, 525, 618
TaqI	TCGA	6 cut(s)	519, 528, 612, 621, 753, 758
TfiI	GAWTC	2 cut(s)	733, 796
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	3 cut(s)	68, 586, 679
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	757
XmiI	GTMKAC	2 cut(s)	519, 612
XspI	CTAG	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.